Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008140

Physical Location & Seq

Genomic Coordinates Reverse (-)

35348531 .. 35349205

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG314700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCTGAAGAACACCTATCGGAGACTCTAGAGAGCGCTATAGGATGCCCAATTATTCTAAATATGAGCCTAGAGCCTGTGGACTTGAAAATCTCAGACGAAAACTCGGCCTCCAGTTATCAGACACAGCTAGTAGAGAGCAGTCATTTTAACCATGGAACAACATTTGTTCCTGAACCTGTTTATGAAGTAGATCTTGGAGCTGCAATGCAACACAGTGGTCAGACGAAAACCTTCTCCTTAAACAGAGAGCAAGTTAAGGCCAACAAAGCTGATGGCTTCAAACTGATATCTAAAAGACAAGACAAATACAGTACAAGCATAAAGGAGGAAACCATTGCTCAGCCACAGGAGATAATACCCTTCAATGATCTTTTAAGACAAGAGAACCAAGAGGATGCATCTATTGATTCGATAACAGATTCTTTGAGCTCTCTGATGGATACAACTCGTACAATGAGAACACAAAGGGCCCAGAAGAAGTTGTTGTCTGTATCCTCTGCTCAACGAAGTGACGCAAGCATTGAACCATACAGTCAAGATATATCGTTCGACAATGCAAAGACAAAGCAAAAGAGAAGTGCAAAATCCCAAAAGCTTCCAAAAGCAATCTTTAAGGTTAAAGAACTTCATGATTCTCAAGATGGTCCAAGAAACAGGTACGTAGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

224

Amino Acids

25.16

Weight (kDa)

5.79

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008140)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27010
rosa_chinensis	RchiOBHm_Chr7g0217971
rosa_laevigata	RLG00000002428
rosa_multiflora	Rmu_co8458853.1_g000001 Rmu_sc0014729.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241570 Rroxscaffold_3G00241580 Rroxscaffold_3G00241590
rosa_rugosa	Rorug07G0172500
rosa_samantha	Rh7AG314700 Rh7AG314800 Rh7AG314900 Rh7BG305000 Rh7BG305100 Rh7BG305200 Rh7BG305300 Rh7CG332200 Rh7CG332300 Rh7CG332400 Rh7DG312900 Rh7DG313000 Rh7DG313100
rosa_wichuraiana	Rw0G017310 Rw7G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	316, 454, 662
AfeI	AGCGCT	1 cut(s)	37
AgsI	TTSAA	4 cut(s)	88, 283, 367, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	5 cut(s)	130, 203, 272, 432, 598
AluI	AGCT	5 cut(s)	130, 203, 272, 432, 598
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	17
Aor51HI	AGCGCT	1 cut(s)	37
AoxI	GGCC	3 cut(s)	108, 261, 471
ApaI	GGGCCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	471, 472, 647
AvaII	GGWCC	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	475
BanII	GRGCYC	2 cut(s)	434, 475
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	269, 433, 638
BciVI	GTATCC	2 cut(s)	436, 505
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	3 cut(s)	29, 71, 131
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	39
BfuI	GTATCC	2 cut(s)	436, 505
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	1 cut(s)	204
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	3 cut(s)	471, 472, 647
BmiI	GGNNCC	1 cut(s)	473
BmsI	GCATC	3 cut(s)	35, 388, 410
BpmI	CTGGAG	1 cut(s)	97
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	624
BsaAI	YACGTR	1 cut(s)	664
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	2 cut(s)	213, 336
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	50, 403
BseMI	GCAATG	2 cut(s)	213, 336
BseMII	CTCAG	2 cut(s)	108, 356
BseNI	ACTGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	3 cut(s)	110, 263, 473
BsiHKAI	GWGCWC	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	3 cut(s)	110, 263, 473
Bsp120I	GGGCCC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	434, 475
Bsp143I	GATC	2 cut(s)	193, 370
Bsp1720I	GCTNAGC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	154
BspANI	GGCC	3 cut(s)	110, 263, 473
BspCNI	CTCAG	2 cut(s)	107, 355
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	473
BsrDI	GCAATG	2 cut(s)	213, 336
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	193, 370
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	218, 314, 536
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	2 cut(s)	94, 342
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	50, 403
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	196, 373
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	193, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	475
BstSNI	TACGTA	1 cut(s)	664
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	2 cut(s)	436, 505
BsuRI	GGCC	3 cut(s)	110, 263, 473
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	50, 403
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	520
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	471, 472, 647
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	315, 453, 661
CviAII	CATG	2 cut(s)	155, 632
CviQI	GTAC	3 cut(s)	315, 453, 661
DdeI	CTNAG	2 cut(s)	94, 342
DpnI	GATC	2 cut(s)	195, 372
DpnII	GATC	2 cut(s)	193, 370
Ecl136II	GAGCTC	1 cut(s)	432
Eco105I	TACGTA	1 cut(s)	664
Eco130I	CCWWGG	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	434, 475
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	647
Eco47III	AGCGCT	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	471
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	2 cut(s)	434, 475
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	158, 635
FaiI	YATR	8 cut(s)	41, 65, 156, 186, 323, 532, 545, 633
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	2 cut(s)	154, 631
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	57, 410
FriOI	GRGCYC	2 cut(s)	434, 475
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	3 cut(s)	29, 71, 131
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	110, 263, 473
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	158, 635
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	25, 410, 422, 635
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	6 cut(s)	7, 22, 97, 123, 225, 438
Hpy188III	TCNNGA	5 cut(s)	29, 173, 539, 632, 641
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	244, 373
HpyCH4III	ACNGT	3 cut(s)	218, 314, 536
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	5 cut(s)	206, 211, 401, 560, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	94, 342
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	158, 635
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	193, 370
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	90, 127, 186, 192, 335, 488, 643
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	3 cut(s)	35, 388, 410
MaeI	CTAG	3 cut(s)	29, 71, 131
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	2 cut(s)	195, 372
MboI	GATC	2 cut(s)	193, 370
MboII	GAAGA	2 cut(s)	20, 490
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	434, 475
MluCI	AATT	2 cut(s)	51, 670
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	121, 322, 388, 508
Mph1103I	ATGCAT	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	7 cut(s)	150, 242, 258, 377, 615, 621, 673
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	193, 370
NlaIII	CATG	2 cut(s)	158, 635
NlaIV	GGNNCC	1 cut(s)	473
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	403
PagI	TCATGA	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	410, 422, 635
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	473
PspOMI	GGGCCC	1 cut(s)	471
PspPI	GGNCC	3 cut(s)	471, 472, 647
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	3 cut(s)	316, 454, 662
RsaNI	GTAC	3 cut(s)	315, 453, 661
SacI	GAGCTC	1 cut(s)	434
SaqAI	TTAA	7 cut(s)	150, 242, 258, 377, 615, 621, 673
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	193, 370
Sau96I	GGNCC	3 cut(s)	471, 472, 647
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	434, 475
SfaNI	GCATC	3 cut(s)	35, 388, 410
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	639
SmoI	CTYRAG	1 cut(s)	639
SnaBI	TACGTA	1 cut(s)	664
Sse9I	AATT	2 cut(s)	51, 670
SspMI	CTAG	3 cut(s)	29, 71, 131
SstI	GAGCTC	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	3 cut(s)	218, 314, 536
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	2 cut(s)	413, 552
TasI	AATT	2 cut(s)	51, 670
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	410, 422, 635
Tru1I	TTAA	7 cut(s)	150, 242, 258, 377, 615, 621, 673
Tru9I	TTAA	7 cut(s)	150, 242, 258, 377, 615, 621, 673
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	201, 620
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	647
XbaI	TCTAGA	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	3 cut(s)	29, 71, 131
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.