Rroxscaffold_3G00241570

DNA polymerase III, delta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008140
Physical Location & Seq
Forward (+)
33816054 .. 33817009
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241570.1

Sequence Viewer

Length: 918 bp
ATGGCTACTGAAGCAATGGAAGTATTGAGAAAGCAAGCCAAGAACACTCAGAAGAGATGTTCAAGCTCAAGCTCCATAGTAGGAGGACACTTCAACGATCCACATCAAGCTCATTTACTGTGCGCAAACCAATTCTGCCAGTGTGAATCTCTGTCATTGAGTAGCAAGCTCACATATAATCCTGCTCCATCGAGTTCAAGAGCTCCAACCCAGCAGCATTCGGAGCATCTGCAGCAGTCATTTCTTGCTTCATCGTCCACAAATCATCAGACTTCAAGAATGAAAGTGAAATCCCAACACAAAGAGGGGATTGTATCTTGTCAGTCGTCCAAAATGCGAAGAGCCACTAGACGAATAAAGGTAATCAGTTCATTTAAAAGGCTGAATGATGGAACAAAGCGAAGCAACTTTCTGAGGGCAATTGTCAAGACAAATCAAGGGAAGAAAATGATCATACCAGCCAGGACAAACAGAGCCCAATGGAGCCTCTATACAGATAACTCCTACTTGAACCAAAATCTCAGCAACAAGTACCGACCACGGCATCTCAAGGACATTGCAGGCCATGAAATGGTTATTAAGGCCATAACCAATGCAATTCAGCAGAATAAGATTGCACCGCTTTATCTTTTCTATGGTGCAAGAGGCTCCGGGAAGACATCTATTGCTAGAATATTAGCATTGGCCTTGAACTGTGAATCCAGCTCATTTATCAAACCGTGCTGGAAATGCCAAGGATGCTCCAGAAGCCTTTCTATTATGGAGTTGTGTTCTGGAAGTACAGTTGCTGGATTCAAAAGGATTAGGAAACTCCTTCAAAGTATATCATCTTTGCAAGCAACACCAGGATTTAAGGTATTTATCCTTGAAGAGTGCGAATCGTTTAGTACAGAATCATGGACGAACTTTCAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

305

Amino Acids

34.12

Weight (kDa)

10.09

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol3_delta2 PF13177 189 - 299 1.1e-12 DNA polymerase III, delta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 571
AciI CCGC 1 cut(s) 620
AclWI GGATC 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 3 cut(s) 533, 781, 889
AfiI CCNNNNNNNGG 1 cut(s) 571
AgsI TTSAA 9 cut(s) 63, 94, 198, 276, 511, 691, 796, 818, 869
AjnI CCWGG 2 cut(s) 461, 844
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 6 cut(s) 66, 72, 110, 169, 203, 705
AluI AGCT 6 cut(s) 66, 72, 110, 169, 203, 705
Alw21I GWGCWC 1 cut(s) 205
AlwI GGATC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 3 cut(s) 562, 582, 684
ApeKI GCWGC 2 cut(s) 214, 232
Asp700I GAANNNNTTC 1 cut(s) 751
AspLEI GCGC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 652
BanII GRGCYC 2 cut(s) 205, 478
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 226, 244
BccI CCATC 2 cut(s) 196, 383
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 2 cut(s) 463, 846
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 1 cut(s) 652
BfaI CTAG 2 cut(s) 348, 669
BfmI CTRYAG 1 cut(s) 230
BisI GCNGC 2 cut(s) 215, 233
BlsI GCNGC 2 cut(s) 216, 234
Bme1390I CCNGG 3 cut(s) 463, 652, 846
BmiI GGNNCC 2 cut(s) 485, 649
BmrFI CCNGG 3 cut(s) 463, 652, 846
BmsI GCATC 3 cut(s) 235, 553, 728
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 727
BpuEI CTTGAG 2 cut(s) 52, 533
BpuMI CCSGG 1 cut(s) 652
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 539, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 2 cut(s) 21, 555
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 2 cut(s) 463, 846
BseDI CCNNGG 2 cut(s) 539, 733
BseGI GGATG 1 cut(s) 743
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 2 cut(s) 21, 555
BseMII CTCAG 3 cut(s) 62, 404, 535
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 226, 244
BseYI CCCAGC 1 cut(s) 210
BshFI GGCC 3 cut(s) 564, 584, 686
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 651
BslI CCNNNNNNNGG 1 cut(s) 571
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 3 cut(s) 564, 584, 686
Bsp1286I GDGCHC 2 cut(s) 205, 478
Bsp143I GATC 2 cut(s) 97, 450
BspACI CCGC 1 cut(s) 620
BspANI GGCC 3 cut(s) 564, 584, 686
BspCNI CTCAG 3 cut(s) 61, 405, 534
BspLI GGNNCC 2 cut(s) 485, 649
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 334
BsrDI GCAATG 2 cut(s) 21, 555
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 539, 733
BssMI GATC 2 cut(s) 97, 450
BssT1I CCWWGG 1 cut(s) 733
Bst2UI CCWGG 2 cut(s) 463, 846
Bst4CI ACNGT 4 cut(s) 120, 695, 720, 784
Bst6I CTCTTC 3 cut(s) 47, 334, 864
BstC8I GCNNGC 4 cut(s) 36, 167, 562, 837
BstDEI CTNAG 3 cut(s) 48, 413, 521
BstDSI CCRYGG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 743
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 100, 453
BstMBI GATC 2 cut(s) 97, 450
BstMWI GCNNNNNNNGC 6 cut(s) 11, 223, 232, 729, 738, 747
BstNI CCWGG 2 cut(s) 463, 846
BstSCI CCNGG 3 cut(s) 461, 650, 844
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 226, 244
BstV2I GAAGAC 1 cut(s) 662
BsuRI GGCC 3 cut(s) 564, 584, 686
BtgI CCRYGG 1 cut(s) 539
BtsCI GGATG 1 cut(s) 743
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 4 cut(s) 36, 167, 562, 837
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 532, 780, 888
CviAII CATG 2 cut(s) 566, 897
CviQI GTAC 3 cut(s) 532, 780, 888
DdeI CTNAG 3 cut(s) 48, 413, 521
DpnI GATC 2 cut(s) 99, 452
DpnII GATC 2 cut(s) 97, 450
DraI TTTAAA 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 47, 334, 864
EarI CTCTTC 3 cut(s) 47, 334, 864
Ecl136II GAGCTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 733
Eco24I GRGCYC 2 cut(s) 205, 478
Eco53kI GAGCTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 461, 844
EcoT14I CCWWGG 1 cut(s) 733
EcoT38I GRGCYC 2 cut(s) 205, 478
ErhI CCWWGG 1 cut(s) 733
FaeI CATG 2 cut(s) 569, 900
FatI CATG 2 cut(s) 565, 896
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 215, 233
FokI GGATG 1 cut(s) 750
FriOI GRGCYC 2 cut(s) 205, 478
Fsp4HI GCNGC 2 cut(s) 215, 233
FspBI CTAG 2 cut(s) 348, 669
FspI TGCGCA 1 cut(s) 124
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 215, 233
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 727
HaeIII GGCC 3 cut(s) 564, 584, 686
HapII CCGG 1 cut(s) 651
HhaI GCGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 569, 900
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 5 cut(s) 146, 698, 792, 878, 893
HpaII CCGG 1 cut(s) 651
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 4 cut(s) 51, 223, 270, 414
Hpy188III TCNNGA 5 cut(s) 198, 276, 427, 744, 774
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 824
HpyCH4III ACNGT 4 cut(s) 120, 695, 720, 784
HpyCH4V TGCA 6 cut(s) 232, 560, 596, 617, 641, 835
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 223, 232, 729, 738, 747
HpyF3I CTNAG 3 cut(s) 48, 413, 521
Hsp92II CATG 2 cut(s) 569, 900
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 2 cut(s) 97, 450
LguI GCTCTTC 1 cut(s) 334
LmnI GCTCC 7 cut(s) 77, 190, 208, 223, 483, 653, 746
Lsp1109I GCAGC 2 cut(s) 226, 244
LweI GCATC 3 cut(s) 235, 553, 728
MaeI CTAG 2 cut(s) 348, 669
MalI GATC 2 cut(s) 99, 452
MboI GATC 2 cut(s) 97, 450
MboII GAAGA 5 cut(s) 64, 351, 454, 667, 881
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 205, 478
MluCI AATT 3 cut(s) 131, 420, 597
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 5 cut(s) 77, 298, 408, 497, 638
MroXI GAANNNNTTC 1 cut(s) 751
MseI TTAA 3 cut(s) 375, 579, 852
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 3 cut(s) 463, 652, 846
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 2 cut(s) 463, 846
MwoI GCNNNNNNNGC 6 cut(s) 11, 223, 232, 729, 738, 747
NciI CCSGG 1 cut(s) 652
NdeII GATC 2 cut(s) 97, 450
NlaIII CATG 2 cut(s) 569, 900
NlaIV GGNNCC 2 cut(s) 485, 649
NsbI TGCGCA 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 334
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 5 cut(s) 146, 698, 792, 878, 893
PflMI CCANNNNNTGG 1 cut(s) 571
PfoI TCCNGGA 1 cut(s) 650
PkrI GCNGC 2 cut(s) 216, 234
Psp124BI GAGCTC 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 461, 844
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 2 cut(s) 461, 844
PspN4I GGNNCC 2 cut(s) 485, 649
PstI CTGCAG 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 788
RsaI GTAC 3 cut(s) 533, 781, 889
RsaNI GTAC 3 cut(s) 532, 780, 888
SacI GAGCTC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 334
SaqAI TTAA 3 cut(s) 375, 579, 852
SatI GCNGC 2 cut(s) 215, 233
Sau3AI GATC 2 cut(s) 97, 450
ScrFI CCNGG 3 cut(s) 463, 652, 846
SduI GDGCHC 2 cut(s) 205, 478
SetI ASST 8 cut(s) 68, 74, 112, 171, 205, 363, 707, 858
SfaNI GCATC 3 cut(s) 235, 553, 728
SfcI CTRYAG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 67, 548
SmoI CTYRAG 2 cut(s) 67, 548
Sse9I AATT 3 cut(s) 131, 420, 597
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 675
SspMI CTAG 2 cut(s) 348, 669
SstI GAGCTC 1 cut(s) 205
StyD4I CCNGG 3 cut(s) 461, 650, 844
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 4 cut(s) 120, 695, 720, 784
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 131, 420, 597
TatI WGTACW 2 cut(s) 779, 887
TfiI GAWTC 5 cut(s) 146, 698, 792, 878, 893
Tru1I TTAA 3 cut(s) 375, 579, 852
Tru9I TTAA 3 cut(s) 375, 579, 852
TscAI CASTG 1 cut(s) 146
TseI GCWGC 2 cut(s) 214, 232
TspDTI ATGAA 4 cut(s) 240, 296, 360, 582
TspRI CASTG 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 571
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 2 cut(s) 348, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.