Rw7G026610

DNA polymerase III, delta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008140
Physical Location & Seq
Reverse (-)
33834123 .. 33837239
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026610.1

Sequence Viewer

Length: 2733 bp
ATGAACACTGAGAAGAGATGTTCAAGCTCAAGCTCCATAGTAGGAGGACACTTCAACGATCCACAACAAGCTCATTTACTTTGCGCAAACCAATTCTGCCAGTGTGAATCTCTGTCATTGAGTAGCAAGCTCACATATAATCCTGCTCCATCGAGTTCAATCGCTCCAACCCAGCAGCATTCGGAGCATCTGCAGCAGTCATTTCTTGCTTCATCGTCCACACATCAGCAGACTTCAAGAATGAAAGTAAAATCCCAACACAAAGAGGGGATTGTATCTTGGCAGTCATCCAAAATGCGCAGAGCCACTAGACGAATAAAGGTAATCAGTTTATTTAAAAGGTTGAATGATGGAACAAAGCGAAACAACTTTCTGAGGGGAAATTGTCAAGACAACTCAAGGGAAGAAAATGATCACACCAGCCAGGAGAAAGTATTTCACTTCGGCATAAATTCTGTTGAATTGAATAGCAGAGCCCAATGGAGCCTCTATACAGATAACTGCTACTTGAACCAAAATCTCAGCAACAAGTACCGACCACGGCATCTCAAGGACATTGCAGGCAATGAAATGGTTATTAAGGCCATAACCAATGCAATTCAGCAGAATAAGATTGCACCGCTTTATCTTTTCTATGGTGCAAGAGGCTCCGGGAAGACATCTACTGCTAGAATATTAGCATTGGCCTTGAACTGTGAATCCAGCTCATTTATCAAACCGTGCTGGAAATGCCAAGGATGCTCCAGAAGCCTTTCTATTATGGAGTTGTGTTCTGGAAGTACAGTTGCTGGATTCAAAAGGATTAGGAAACTCCTTCAAAGTATATCATCTTTGCAAGCAACACCAGGATTTAAGGTATTTATCCTTGAAGAGTGCGAATCGTTTAGTACAGAAGCATGGGACGAACTTTCAGGCATAGCAAATGGAGCTTACAATGCTAGTGTGGTATTCATCCTTATCACTACAAATGCAGACATGGTGCCTAGAACCATATCATCAAGATGTCAGAAATTCTTCTTTCCCAAACTCAGAGACAGTGATATCATGCTCAAGTTGACTAGAATTGCAGCCCAAGAGGGTATAAGGATTGAAAAAGAAGCAATCAAACTGGTTACTACCAAAGCACAAGGATCTTTGCGAGAAGCTGAAAACATATTAGACCAGCTGATATTACTGGGGCCAAAGATAACAAGTTCCATGGCACAACAGCTTGTAGGTCTTGTTCCGCACGATAAGCTCAATGAATTGCTTGCAATGGCACTTTCCGGAGACACTATGCAAACCCTGAGATGTGCAAGGCAGCTGATTGGAACTGGTATTGAACCACAAATGTTTGTATCACAATTGGTTTCGCACATCACCAACATGCTTTTCAGTGAGGCTGATGCTGTTCCTGAAACCTCTTCTTCTACTCACTTATCAACAGATAAGGAACTTCTGCAAGGAGGATCAGAGCACACTGCAGTAGAGAAGCAACCCAGGTCTTCAACTGACCAAACCTTGCAGATATTTAATGCTCTTTTACAAATTGCTTCTAGAGATGCTTCCAGCAAAAGATCTTCTGGATCTGTCCTATCCCCAGGTACGTTCAAGTGCATCATCCTCAGACATGCAATTTCTATCTGGGAACAAAAATCAGTTTCATTAATTGAGTTGAAGTTGGCACAACTTATACCAGTTTTGTCTGCAGTAGCAGATTACAAGTCCAATGCAGAAATGGAGTTGCATAGCCTAACCCACAGCAGGTACTTGGTGAACCACATTGCCATCAGCAACACTGCTGAGCAACAAGAGATGGACAATACGAAACAAAAGTCTACAATCAAAAGCATTACGAAACAGACAAATTGCAGAGACAAGGCAGTTGATGGAGAGACCCACTTTACTTGCATCAGTGAAATGGAAGAAATTTGGCTAAACATGTTGGGCAGGATGCATAGTTCATATTTGAAAGACTTTTTGCGCCACAAAGTGAAGCTTGCATCATTAACTATAACTAGTGCCAATGCAATTTTGCATTTGATGTTCAAAAGACCAGAAGACAAGCAGATCGCTCAGATGTCTGAAGAACACCTATCGGAGACTCTAGAGAGCGCTATAGGATGCCCAATTATTCTAAATATGAGCCTAGAGCCTGTGGACTTGAAAATCTCAGACGAAAACTCGGCCTCCAGTTATCAGACACAGCTAGTGGAGAGCAGTCATTTTAACCATGGAACAAAATTTGTTCCTGAAACTGTTTATGAAGTAGATCTTGGAGCTGCAATGCAACACAATGGTCAGATGAAAACCTTCTCCTTAAACAGAGAGCAAGTTAAGGCCAACAAAGCTGATGGCTGCAAACTGATATCTAAAAGGCAAGACAAATACAGTACAAGCATAAAGGAGGAAACCATTGCTCAGCCACAGGAGATAACACCCTTCAATGATCTTTTAAGACAAAAGAACCAAGAGGATGCGTCTATTGATTTGATAACAGATTGTTTGAGTTCTCTGATGGACACAACTTGTACAATGAGGACACAAAGGCCCCAGAAGAAGTGGTTGTCTGTATCCTCTGCTCAACGAAGTGACGCAAGCATTGAACCATACAGTCAAGATATATCGTTTGACAATGCAAAGACAAAGATAAAGAGAAGTGCAAAATCCCAAAAGCTTCCAAAAGCATTCTTTAAGGTTAAAGAACTTCATGATTCTCAAGATGGTCCAAGAAACAGGTACATACTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

910

Amino Acids

101.81

Weight (kDa)

8.89

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol3_delta2 PF13177 189 - 343 1e-19 DNA polymerase III, delta subunit
AAA PF00004 209 - 340 1.3e-08 ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid PF22608 348 - 393 9.2e-08 DNA polymerase III clamp loader subunit, ATPase lid domain
DnaA_N-like_STI PF23007 632 - 710 5.1e-18 STICHEL, DnaA_N-like alpha-beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 85, 299
Acc36I ACCTGC 1 cut(s) 1734
AccB1I GGYRCC 1 cut(s) 979
AccI GTMKAC 1 cut(s) 1817
AccIII TCCGGA 1 cut(s) 1265
AciI CCGC 2 cut(s) 620, 1226
AclWI GGATC 4 cut(s) 53, 1138, 1456, 1573
AcsI RAATTY 4 cut(s) 451, 1010, 1908, 2222
AcuI CTGAAG 1 cut(s) 2085
AdeI CACNNNGTG 1 cut(s) 1972
AfaI GTAC 8 cut(s) 533, 781, 889, 1585, 1748, 2374, 2512, 2720
AfeI AGCGCT 1 cut(s) 2095
AfiI CCNNNNNNNGG 1 cut(s) 1743
AflIII ACRYGT 1 cut(s) 1920
AhlI ACTAGT 1 cut(s) 1997
AjnI CCWGG 4 cut(s) 423, 844, 1478, 1579
AjuI GAANNNNNNNTTGG 4 cut(s) 1355, 1387, 2238, 2270
AloI GAACNNNNNNTCC 4 cut(s) 683, 715, 1924, 1956
Alw21I GWGCWC 1 cut(s) 1458
Alw26I GTCTC 5 cut(s) 1026, 1263, 1848, 1868, 2075
AlwI GGATC 4 cut(s) 53, 1138, 1456, 1573
AlwNI CAGNNNCTG 1 cut(s) 788
Aor13HI TCCGGA 1 cut(s) 1265
Aor51HI AGCGCT 1 cut(s) 2095
AoxI GGCC 6 cut(s) 582, 684, 1178, 2166, 2319, 2528
ApeKI GCWGC 6 cut(s) 175, 193, 1067, 1300, 2261, 2337
ApoI RAATTY 4 cut(s) 451, 1010, 1908, 2222
ArsI GACNNNNNNTTYG 2 cut(s) 1799, 1831
AseI ATTAAT 1 cut(s) 1646
Asp700I GAANNNNTTC 3 cut(s) 751, 1013, 2291
AspLEI GCGC 4 cut(s) 86, 300, 1965, 2096
AspS9I GGNCC 3 cut(s) 1178, 2529, 2705
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 2 cut(s) 1351, 1765
AvaII GGWCC 1 cut(s) 2705
BanI GGYRCC 1 cut(s) 979
BanII GRGCYC 1 cut(s) 478
BbsI GAAGAC 3 cut(s) 662, 1476, 2046
Bbv12I GWGCWC 1 cut(s) 1458
BbvI GCAGC 6 cut(s) 187, 205, 1079, 1312, 2248, 2324
BccI CCATC 8 cut(s) 157, 344, 1775, 1789, 1862, 2327, 2491, 2696
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 4 cut(s) 425, 846, 1480, 1581
BciVI GTATCC 1 cut(s) 2563
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 5 cut(s) 1026, 1263, 1848, 1868, 2075
BcuI ACTAGT 1 cut(s) 1997
BfmI CTRYAG 4 cut(s) 191, 1461, 1686, 2097
BfoI RGCGCY 1 cut(s) 2097
BfuAI ACCTGC 1 cut(s) 1734
BfuI GTATCC 1 cut(s) 2563
BglII AGATCT 2 cut(s) 1556, 2251
BisI GCNGC 6 cut(s) 176, 194, 1068, 1301, 2262, 2338
BlpI GCTNAGC 2 cut(s) 1782, 2400
BlsI GCNGC 6 cut(s) 177, 195, 1069, 1302, 2263, 2339
Bme1390I CCNGG 5 cut(s) 425, 652, 846, 1480, 1581
Bme18I GGWCC 1 cut(s) 2705
BmgT120I GGNCC 3 cut(s) 1178, 2529, 2705
BmiI GGNNCC 5 cut(s) 485, 649, 981, 1179, 2531
BmrFI CCNGG 5 cut(s) 425, 652, 846, 1480, 1581
BmrI ACTGGG 1 cut(s) 1184
BmuI ACTGGG 1 cut(s) 1184
BpiI GAAGAC 3 cut(s) 662, 1476, 2046
BpmI CTGGAG 2 cut(s) 727, 2155
Bpu1102I GCTNAGC 2 cut(s) 1782, 2400
BpuEI CTTGAG 5 cut(s) 13, 382, 533, 1034, 2682
BpuMI CCSGG 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 1868
BsaJI CCNNGG 6 cut(s) 539, 733, 1197, 1478, 1579, 2212
BsaWI WCCGGW 1 cut(s) 1265
BsaXI ACNNNNNCTCC 2 cut(s) 2153, 2183
Bsc4I CCNNNNNNNGG 1 cut(s) 1743
Bse1I ACTGG 6 cut(s) 100, 1113, 1179, 1318, 1676, 2172
Bse3DI GCAATG 6 cut(s) 555, 571, 1260, 1761, 2271, 2394
BseAI TCCGGA 1 cut(s) 1265
BseBI CCWGG 4 cut(s) 425, 846, 1480, 1581
BseDI CCNNGG 6 cut(s) 539, 733, 1197, 1478, 1579, 2212
BseGI GGATG 7 cut(s) 287, 743, 951, 1599, 1938, 2108, 2461
BseLI CCNNNNNNNGG 1 cut(s) 1743
BseMI GCAATG 6 cut(s) 555, 571, 1260, 1761, 2271, 2394
BseMII CTCAG 9 cut(s) 365, 535, 1042, 1277, 1618, 1773, 2069, 2166, 2414
BseNI ACTGG 6 cut(s) 100, 1113, 1179, 1318, 1676, 2172
BseXI GCAGC 6 cut(s) 187, 205, 1079, 1312, 2248, 2324
BseYI CCCAGC 1 cut(s) 171
BshFI GGCC 6 cut(s) 584, 686, 1180, 2168, 2321, 2530
BshNI GGYRCC 1 cut(s) 979
BsiHKAI GWGCWC 1 cut(s) 1458
BsiSI CCGG 2 cut(s) 651, 1266
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 1 cut(s) 1743
BsmAI GTCTC 5 cut(s) 1026, 1263, 1848, 1868, 2075
BsmFI GGGAC 1 cut(s) 914
BsmI GAATGC 2 cut(s) 178, 2666
BsnI GGCC 6 cut(s) 584, 686, 1180, 2168, 2321, 2530
Bso31I GGTCTC 1 cut(s) 1868
Bsp1286I GDGCHC 2 cut(s) 478, 1458
Bsp13I TCCGGA 1 cut(s) 1265
Bsp1407I TGTACA 1 cut(s) 2510
Bsp143I GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
Bsp1720I GCTNAGC 2 cut(s) 1782, 2400
Bsp19I CCATGG 2 cut(s) 1197, 2212
BspACI CCGC 2 cut(s) 620, 1226
BspANI GGCC 6 cut(s) 584, 686, 1180, 2168, 2321, 2530
BspCNI CTCAG 9 cut(s) 366, 534, 1041, 1278, 1617, 1774, 2068, 2165, 2413
BspEI TCCGGA 1 cut(s) 1265
BspHI TCATGA 1 cut(s) 2689
BspLI GGNNCC 5 cut(s) 485, 649, 981, 1179, 2531
BspMAI CTGCAG 3 cut(s) 195, 1465, 1690
BspMI ACCTGC 1 cut(s) 1734
BspPI GGATC 4 cut(s) 53, 1138, 1456, 1573
BspT107I GGYRCC 1 cut(s) 979
BspTNI GGTCTC 1 cut(s) 1868
BsrDI GCAATG 6 cut(s) 555, 571, 1260, 1761, 2271, 2394
BsrGI TGTACA 1 cut(s) 2510
BsrI ACTGG 6 cut(s) 100, 1113, 1179, 1318, 1676, 2172
BssECI CCNNGG 6 cut(s) 539, 733, 1197, 1478, 1579, 2212
BssMI GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
BssT1I CCWWGG 3 cut(s) 733, 1197, 2212
Bst2UI CCWGG 4 cut(s) 425, 846, 1480, 1581
Bst4CI ACNGT 7 cut(s) 695, 720, 784, 1037, 2239, 2372, 2594
Bst6I CTCTTC 3 cut(s) 8, 864, 1408
BstAUI TGTACA 1 cut(s) 2510
BstC8I GCNNGC 6 cut(s) 128, 562, 837, 1251, 1980, 2578
BstDSI CCRYGG 3 cut(s) 539, 1197, 2212
BstF5I GGATG 7 cut(s) 287, 743, 951, 1599, 1938, 2108, 2461
BstH2I RGCGCY 1 cut(s) 2097
BstHHI GCGC 4 cut(s) 86, 300, 1965, 2096
BstKTI GATC 9 cut(s) 61, 415, 1133, 1451, 1559, 1568, 2052, 2254, 2431
BstMAI GTCTC 5 cut(s) 1026, 1263, 1848, 1868, 2075
BstMBI GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
BstMWI GCNNNNNNNGC 9 cut(s) 184, 193, 729, 738, 747, 926, 935, 1234, 2327
BstNI CCWGG 4 cut(s) 425, 846, 1480, 1581
BstNSI RCATGY 3 cut(s) 1369, 1613, 1924
BstSCI CCNGG 5 cut(s) 423, 650, 844, 1478, 1579
BstSFI CTRYAG 4 cut(s) 191, 1461, 1686, 2097
BstV1I GCAGC 6 cut(s) 187, 205, 1079, 1312, 2248, 2324
BstV2I GAAGAC 3 cut(s) 662, 1476, 2046
BstX2I RGATCY 4 cut(s) 1130, 1556, 1565, 2251
BstYI RGATCY 4 cut(s) 1130, 1556, 1565, 2251
BsuI GTATCC 1 cut(s) 2563
BsuRI GGCC 6 cut(s) 584, 686, 1180, 2168, 2321, 2530
BtgI CCRYGG 3 cut(s) 539, 1197, 2212
BtsCI GGATG 7 cut(s) 287, 743, 951, 1599, 1938, 2108, 2461
BtsI GCAGTG 2 cut(s) 1458, 1776
BtsIMutI CAGTG 7 cut(s) 6, 107, 1042, 1381, 1458, 1776, 1900
BveI ACCTGC 1 cut(s) 1734
Cac8I GCNNGC 6 cut(s) 128, 562, 837, 1251, 1980, 2578
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 1 cut(s) 2689
CfoI GCGC 4 cut(s) 86, 300, 1965, 2096
Cfr13I GGNCC 3 cut(s) 1178, 2529, 2705
CseI GACGC 2 cut(s) 2448, 2582
Csp6I GTAC 8 cut(s) 532, 780, 888, 1584, 1747, 2373, 2511, 2719
CspCI CAANNNNNGTGG 2 cut(s) 1868, 1903
CviAII CATG 9 cut(s) 897, 976, 1045, 1198, 1366, 1610, 1921, 2213, 2690
CviQI GTAC 8 cut(s) 532, 780, 888, 1584, 1747, 2373, 2511, 2719
DpnI GATC 9 cut(s) 60, 414, 1132, 1450, 1558, 1567, 2051, 2253, 2430
DpnII GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
DraI TTTAAA 1 cut(s) 337
DraIII CACNNNGTG 1 cut(s) 1972
Eam1104I CTCTTC 3 cut(s) 8, 864, 1408
EarI CTCTTC 3 cut(s) 8, 864, 1408
Eco130I CCWWGG 3 cut(s) 733, 1197, 2212
Eco24I GRGCYC 1 cut(s) 478
Eco31I GGTCTC 1 cut(s) 1868
Eco32I GATATC 2 cut(s) 1042, 2349
Eco47I GGWCC 1 cut(s) 2705
Eco47III AGCGCT 1 cut(s) 2095
Eco57I CTGAAG 1 cut(s) 2085
EcoO109I RGGNCCY 1 cut(s) 2529
EcoRII CCWGG 4 cut(s) 423, 844, 1478, 1579
EcoRV GATATC 2 cut(s) 1042, 2349
EcoT14I CCWWGG 3 cut(s) 733, 1197, 2212
EcoT22I ATGCAT 1 cut(s) 1938
EcoT38I GRGCYC 1 cut(s) 478
ErhI CCWWGG 3 cut(s) 733, 1197, 2212
FaeI CATG 9 cut(s) 900, 979, 1048, 1201, 1369, 1613, 1924, 2216, 2693
FalI AAGNNNNNCTT 4 cut(s) 1962, 1994, 2238, 2270
FaqI GGGAC 1 cut(s) 914
FatI CATG 9 cut(s) 896, 975, 1044, 1197, 1365, 1609, 1920, 2212, 2689
FbaI TGATCA 1 cut(s) 412
FblI GTMKAC 1 cut(s) 1817
Fnu4HI GCNGC 6 cut(s) 176, 194, 1068, 1301, 2262, 2338
FokI GGATG 7 cut(s) 274, 750, 938, 1586, 1945, 2115, 2468
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 6 cut(s) 176, 194, 1068, 1301, 2262, 2338
FspI TGCGCA 2 cut(s) 85, 299
GlaI GCGC 4 cut(s) 85, 299, 1964, 2095
GluI GCNGC 6 cut(s) 176, 194, 1068, 1301, 2262, 2338
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 2 cut(s) 727, 2155
HaeII RGCGCY 1 cut(s) 2097
HaeIII GGCC 6 cut(s) 584, 686, 1180, 2168, 2321, 2530
HapII CCGG 2 cut(s) 651, 1266
HgaI GACGC 2 cut(s) 2448, 2582
HhaI GCGC 4 cut(s) 86, 300, 1965, 2096
Hin1II CATG 9 cut(s) 900, 979, 1048, 1201, 1369, 1613, 1924, 2216, 2693
Hin6I GCGC 4 cut(s) 84, 298, 1963, 2094
HinP1I GCGC 4 cut(s) 84, 298, 1963, 2094
HincII GTYRAC 1 cut(s) 1056
HindII GTYRAC 1 cut(s) 1056
HindIII AAGCTT 2 cut(s) 1976, 2654
HinfI GANTC 6 cut(s) 107, 698, 792, 878, 2083, 2693
HpaII CCGG 2 cut(s) 651, 1266
HphI GGTGA 2 cut(s) 1351, 1765
Hpy166II GTNNAC 5 cut(s) 219, 1056, 1756, 1818, 2140
Hpy8I GTNNAC 5 cut(s) 219, 1056, 1756, 1818, 2140
HpyAV CCTTC 3 cut(s) 824, 2302, 2431
HpyCH4III ACNGT 7 cut(s) 695, 720, 784, 1037, 2239, 2372, 2594
HpyCH4IV ACGT 1 cut(s) 1586
HpyF10VI GCNNNNNNNGC 9 cut(s) 184, 193, 729, 738, 747, 926, 935, 1234, 2327
HpySE526I ACGT 1 cut(s) 1586
Hsp92II CATG 9 cut(s) 900, 979, 1048, 1201, 1369, 1613, 1924, 2216, 2693
HspAI GCGC 4 cut(s) 84, 298, 1963, 2094
Kpn2I TCCGGA 1 cut(s) 1265
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
LmnI GCTCC 9 cut(s) 38, 151, 169, 184, 483, 653, 746, 926, 2258
Lsp1109I GCAGC 6 cut(s) 187, 205, 1079, 1312, 2248, 2324
MaeII ACGT 1 cut(s) 1586
MaeIII GTNAC 2 cut(s) 1111, 2570
MalI GATC 9 cut(s) 60, 414, 1132, 1450, 1558, 1567, 2051, 2253, 2430
MboI GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
MfeI CAATTG 1 cut(s) 1343
MflI RGATCY 4 cut(s) 1130, 1556, 1565, 2251
MhlI GDGCHC 2 cut(s) 478, 1458
MlyI GAGTC 1 cut(s) 2077
MmeI TCCRAC 1 cut(s) 191
Mph1103I ATGCAT 1 cut(s) 1938
MroI TCCGGA 1 cut(s) 1265
MroXI GAANNNNTTC 3 cut(s) 751, 1013, 2291
MslI CAYNNNNRTG 2 cut(s) 1000, 1364
MspA1I CMGCKG 2 cut(s) 1165, 1303
MspI CCGG 2 cut(s) 651, 1266
MspR9I CCNGG 5 cut(s) 425, 652, 846, 1480, 1581
MunI CAATTG 1 cut(s) 1343
Mva1269I GAATGC 2 cut(s) 178, 2666
MvaI CCWGG 4 cut(s) 425, 846, 1480, 1581
MwoI GCNNNNNNNGC 9 cut(s) 184, 193, 729, 738, 747, 926, 935, 1234, 2327
NciI CCSGG 1 cut(s) 652
NcoI CCATGG 2 cut(s) 1197, 2212
NdeII GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
NlaIII CATG 9 cut(s) 900, 979, 1048, 1201, 1369, 1613, 1924, 2216, 2693
NlaIV GGNNCC 5 cut(s) 485, 649, 981, 1179, 2531
NmeAIII GCCGAG 1 cut(s) 2144
NmuCI GTSAC 1 cut(s) 2570
NsbI TGCGCA 2 cut(s) 85, 299
NsiI ATGCAT 1 cut(s) 1938
NspI RCATGY 3 cut(s) 1369, 1613, 1924
PagI TCATGA 1 cut(s) 2689
PciI ACATGT 1 cut(s) 1920
PctI GAATGC 2 cut(s) 178, 2666
PdmI GAANNNNTTC 3 cut(s) 751, 1013, 2291
PfeI GAWTC 5 cut(s) 107, 698, 792, 878, 2693
PfoI TCCNGGA 1 cut(s) 650
PkrI GCNGC 6 cut(s) 177, 195, 1069, 1302, 2263, 2339
PleI GAGTC 1 cut(s) 2077
PpsI GAGTC 1 cut(s) 2077
PscI ACATGT 1 cut(s) 1920
PshBI ATTAAT 1 cut(s) 1646
Psp6I CCWGG 4 cut(s) 423, 844, 1478, 1579
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 4 cut(s) 423, 844, 1478, 1579
PspN4I GGNNCC 5 cut(s) 485, 649, 981, 1179, 2531
PspPI GGNCC 3 cut(s) 1178, 2529, 2705
PsrI GAACNNNNNNTAC 2 cut(s) 1206, 1238
PstI CTGCAG 3 cut(s) 195, 1465, 1690
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 4 cut(s) 1130, 1556, 1565, 2251
PvuII CAGCTG 2 cut(s) 1165, 1303
RsaI GTAC 8 cut(s) 533, 781, 889, 1585, 1748, 2374, 2512, 2720
RsaNI GTAC 8 cut(s) 532, 780, 888, 1584, 1747, 2373, 2511, 2719
RseI CAYNNNNRTG 2 cut(s) 1000, 1364
SatI GCNGC 6 cut(s) 176, 194, 1068, 1301, 2262, 2338
Sau3AI GATC 9 cut(s) 58, 412, 1130, 1448, 1556, 1565, 2049, 2251, 2428
Sau96I GGNCC 3 cut(s) 1178, 2529, 2705
SchI GAGTC 1 cut(s) 2077
ScrFI CCNGG 5 cut(s) 425, 652, 846, 1480, 1581
SduI GDGCHC 2 cut(s) 478, 1458
SfcI CTRYAG 4 cut(s) 191, 1461, 1686, 2097
SinI GGWCC 1 cut(s) 2705
SmiMI CAYNNNNRTG 2 cut(s) 1000, 1364
SmlI CTYRAG 5 cut(s) 28, 397, 548, 1049, 2697
SmoI CTYRAG 5 cut(s) 28, 397, 548, 1049, 2697
SpeI ACTAGT 1 cut(s) 1997
SsiI CCGC 2 cut(s) 620, 1226
SspI AATATT 1 cut(s) 675
StyD4I CCNGG 5 cut(s) 423, 650, 844, 1478, 1579
StyI CCWWGG 3 cut(s) 733, 1197, 2212
TaaI ACNGT 7 cut(s) 695, 720, 784, 1037, 2239, 2372, 2594
TaiI ACGT 1 cut(s) 1589
TaqI TCGA 1 cut(s) 152
TatI WGTACW 4 cut(s) 779, 887, 2372, 2510
TfiI GAWTC 5 cut(s) 107, 698, 792, 878, 2693
TscAI CASTG 7 cut(s) 13, 107, 1042, 1381, 1465, 1783, 1900
TseFI GTSAC 1 cut(s) 2570
TseI GCWGC 6 cut(s) 175, 193, 1067, 1300, 2261, 2337
Tsp45I GTSAC 1 cut(s) 2570
TspRI CASTG 7 cut(s) 13, 107, 1042, 1381, 1465, 1783, 1900
VpaK11BI GGWCC 1 cut(s) 2705
VspI ATTAAT 1 cut(s) 1646
XapI RAATTY 4 cut(s) 451, 1010, 1908, 2222
XbaI TCTAGA 2 cut(s) 1535, 2086
XceI RCATGY 3 cut(s) 1369, 1613, 1924
XcmI CCANNNNNNNNNTGG 1 cut(s) 1714
XmiI GTMKAC 1 cut(s) 1817
XmnI GAANNNNTTC 3 cut(s) 751, 1013, 2291
Zsp2I ATGCAT 1 cut(s) 1938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.