Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458853.1

Orthogroup ID

OG0008140

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1741

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458853.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1477 bp

atggttattaaggccataaccaatgcaattcagcagaataagattgcacggctttatcttttttatggtgcaagaggctccgggaagacatctattgctagaatattagcattggccttgaactgtgaatccagctcatttatcaaaccgtgctggaaatgccaaggatgctccagaagcctttctattatggagttgtgttctggaagtacagttgctggattcaaaaggattaggaaactccttcaaggtatatcatctttgcaagcaacaccaggatttaaggtatttatccttgaagagtgcgaatcgtttagtacagaagcatgggacgaactttcaggcatagcaaatggagcttacaatgctggtgtggtattcatccttatcactacaaatgcggacatggtgcctagaaccatatcatcaagatgtcagaaattcttctttcccaaactcagagacactgatatcatgctcaagttgactagaattgcagcccaagagggtataaggattgaaaaagaagcaatcaaactggttattaccaaagcacaaggatctttgcgagaagctgaaaacatattagaccagctgatattactggggccaaagataacaagttccatggcacaacagcttgtaggtcttgttccgcacgataagctcaatgaattgcttgcaatggcactttccggagacactatgcaaaccctgagatgtgcaaggcagctgattggaactggtattgaaccacaaatgtttgtatcacaattggtttcgcacatcaccaacatgcttttcagtgaggctgatgctgttcctgaaacctcttcttctactcacttatcaacagataaggaacttctgcaaggaggatcagagcacaaaaataatcaatcagtggcactgtgttgtgccttacaaatattagctgcagtagagaagcaacccaggtcttcaactgaccaaaccttgcagatatttaatgctcttttacaaattgcttctagagatgcttccagcaaaagatcttctggatctgtcctatccccaggtacgttcaagtgcatcatcctcagacatgcaatttctatctgggaacaaaaatcagtttcattaattgagttgaagttggcacaacttataccagttttgtctgcagtagcagattacaagtccaatgcagaaatggagttgcatagcctaacccacagcaggtacttggtgaaccacattgccatcagcaacactgctgagcaacaagagatggacaatacgaaacaaaagtctaccatcaaaagcattacgaaacagacaaattgcagagacaaggcagttgatggagagacccactttacttgcatcagtgaaatggaagaaatttggctaaacatgttgggcaggatgcatagttcatatttgaaagactttttgcgccacaaagtgaagcttgcatcattaactataactagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

492

Amino Acids

54.23

Weight (kDa)

8.86

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008140)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27010
rosa_chinensis	RchiOBHm_Chr7g0217971
rosa_laevigata	RLG00000002428
rosa_multiflora	Rmu_co8458853.1_g000001 Rmu_sc0014729.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241570 Rroxscaffold_3G00241580 Rroxscaffold_3G00241590
rosa_rugosa	Rorug07G0172500
rosa_samantha	Rh7AG314700 Rh7AG314800 Rh7AG314900 Rh7BG305000 Rh7BG305100 Rh7BG305200 Rh7BG305300 Rh7CG332200 Rh7CG332300 Rh7CG332400 Rh7DG312900 Rh7DG313000 Rh7DG313100
rosa_wichuraiana	Rw0G017310 Rw7G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1209
AccB1I	GGYRCC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	1292
AccIII	TCCGGA	1 cut(s)	695
AciI	CCGC	2 cut(s)	401, 656
AclWI	GGATC	3 cut(s)	568, 886, 1048
AcsI	RAATTY	2 cut(s)	440, 1383
AdeI	CACNNNGTG	1 cut(s)	1447
AfaI	GTAC	4 cut(s)	211, 319, 1060, 1223
AfiI	CCNNNNNNNGG	1 cut(s)	1218
AflIII	ACRYGT	1 cut(s)	1395
AhlI	ACTAGT	1 cut(s)	1472
AjnI	CCWGG	3 cut(s)	274, 953, 1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 1399, 1431
AluBI	AGCT	9 cut(s)	135, 359, 575, 595, 640, 667, 733, 935, 1453
AluI	AGCT	9 cut(s)	135, 359, 575, 595, 640, 667, 733, 935, 1453
Alw21I	GWGCWC	1 cut(s)	888
Alw26I	GTCTC	4 cut(s)	456, 693, 1323, 1343
AlwI	GGATC	3 cut(s)	568, 886, 1048
AlwNI	CAGNNNCTG	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	695
AoxI	GGCC	3 cut(s)	12, 114, 608
ApeKI	GCWGC	3 cut(s)	497, 730, 935
ApoI	RAATTY	2 cut(s)	440, 1383
ArsI	GACNNNNNNTTYG	2 cut(s)	1274, 1306
AseI	ATTAAT	1 cut(s)	1121
Asp700I	GAANNNNTTC	2 cut(s)	181, 443
AspLEI	GCGC	1 cut(s)	1440
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	781, 1240
BanI	GGYRCC	1 cut(s)	409
BbsI	GAAGAC	2 cut(s)	92, 951
Bbv12I	GWGCWC	1 cut(s)	888
BbvI	GCAGC	3 cut(s)	509, 742, 922
BccI	CCATC	4 cut(s)	1250, 1264, 1304, 1337
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	3 cut(s)	276, 955, 1056
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	4 cut(s)	456, 693, 1323, 1343
BcuI	ACTAGT	1 cut(s)	1472
BfaI	CTAG	5 cut(s)	99, 414, 489, 1011, 1473
BfmI	CTRYAG	2 cut(s)	936, 1161
BfuAI	ACCTGC	1 cut(s)	1209
BglII	AGATCT	1 cut(s)	1031
BisI	GCNGC	3 cut(s)	498, 731, 936
BlpI	GCTNAGC	1 cut(s)	1257
BlsI	GCNGC	3 cut(s)	499, 732, 937
Bme1390I	CCNGG	4 cut(s)	82, 276, 955, 1056
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	3 cut(s)	79, 411, 609
BmrFI	CCNGG	4 cut(s)	82, 276, 955, 1056
BmrI	ACTGGG	1 cut(s)	614
BmsI	GCATC	7 cut(s)	158, 805, 1006, 1080, 1374, 1398, 1466
BmuI	ACTGGG	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	92, 951
BpmI	CTGGAG	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	1257
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	1343
BsaJI	CCNNGG	4 cut(s)	163, 627, 953, 1054
BsaWI	WCCGGW	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	1 cut(s)	1218
Bse1I	ACTGG	4 cut(s)	543, 609, 748, 1151
Bse3DI	GCAATG	2 cut(s)	690, 1236
BseAI	TCCGGA	1 cut(s)	695
BseBI	CCWGG	3 cut(s)	276, 955, 1056
BseDI	CCNNGG	4 cut(s)	163, 627, 953, 1054
BseGI	GGATG	4 cut(s)	173, 381, 1074, 1413
BseLI	CCNNNNNNNGG	1 cut(s)	1218
BseMI	GCAATG	2 cut(s)	690, 1236
BseMII	CTCAG	4 cut(s)	472, 707, 1093, 1248
BseNI	ACTGG	4 cut(s)	543, 609, 748, 1151
BseXI	GCAGC	3 cut(s)	509, 742, 922
BshFI	GGCC	3 cut(s)	14, 116, 610
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	888
BsiSI	CCGG	2 cut(s)	81, 696
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	1218
BsmAI	GTCTC	4 cut(s)	456, 693, 1323, 1343
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	14, 116, 610
Bso31I	GGTCTC	1 cut(s)	1343
Bsp1286I	GDGCHC	1 cut(s)	888
Bsp13I	TCCGGA	1 cut(s)	695
Bsp143I	GATC	4 cut(s)	560, 878, 1031, 1040
Bsp1720I	GCTNAGC	1 cut(s)	1257
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	2 cut(s)	401, 656
BspANI	GGCC	3 cut(s)	14, 116, 610
BspCNI	CTCAG	4 cut(s)	471, 708, 1092, 1249
BspEI	TCCGGA	1 cut(s)	695
BspLI	GGNNCC	3 cut(s)	79, 411, 609
BspMAI	CTGCAG	2 cut(s)	940, 1165
BspMI	ACCTGC	1 cut(s)	1209
BspPI	GGATC	3 cut(s)	568, 886, 1048
BspT107I	GGYRCC	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	1343
BsrDI	GCAATG	2 cut(s)	690, 1236
BsrI	ACTGG	4 cut(s)	543, 609, 748, 1151
BssECI	CCNNGG	4 cut(s)	163, 627, 953, 1054
BssMI	GATC	4 cut(s)	560, 878, 1031, 1040
BssT1I	CCWWGG	2 cut(s)	163, 627
Bst2UI	CCWGG	3 cut(s)	276, 955, 1056
Bst4CI	ACNGT	4 cut(s)	125, 150, 214, 912
Bst6I	CTCTTC	2 cut(s)	294, 838
BstC8I	GCNNGC	3 cut(s)	267, 681, 1455
BstDEI	CTNAG	4 cut(s)	458, 716, 1079, 1257
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	4 cut(s)	173, 381, 1074, 1413
BstHHI	GCGC	1 cut(s)	1440
BstKTI	GATC	4 cut(s)	563, 881, 1034, 1043
BstMAI	GTCTC	4 cut(s)	456, 693, 1323, 1343
BstMBI	GATC	4 cut(s)	560, 878, 1031, 1040
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 168, 177, 356, 365, 664
BstNI	CCWGG	3 cut(s)	276, 955, 1056
BstNSI	RCATGY	3 cut(s)	799, 1088, 1399
BstSCI	CCNGG	4 cut(s)	80, 274, 953, 1054
BstSFI	CTRYAG	2 cut(s)	936, 1161
BstV1I	GCAGC	3 cut(s)	509, 742, 922
BstV2I	GAAGAC	2 cut(s)	92, 951
BstX2I	RGATCY	3 cut(s)	560, 1031, 1040
BstYI	RGATCY	3 cut(s)	560, 1031, 1040
BsuRI	GGCC	3 cut(s)	14, 116, 610
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	4 cut(s)	173, 381, 1074, 1413
BtsI	GCAGTG	1 cut(s)	1251
BtsIMutI	CAGTG	6 cut(s)	465, 811, 908, 909, 1251, 1375
BveI	ACCTGC	1 cut(s)	1209
Cac8I	GCNNGC	3 cut(s)	267, 681, 1455
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	1440
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	4 cut(s)	210, 318, 1059, 1222
CspCI	CAANNNNNGTGG	2 cut(s)	1343, 1378
CviAII	CATG	7 cut(s)	327, 406, 475, 628, 796, 1085, 1396
CviQI	GTAC	4 cut(s)	210, 318, 1059, 1222
DdeI	CTNAG	4 cut(s)	458, 716, 1079, 1257
DpnI	GATC	4 cut(s)	562, 880, 1033, 1042
DpnII	GATC	4 cut(s)	560, 878, 1031, 1040
DraIII	CACNNNGTG	1 cut(s)	1447
Eam1104I	CTCTTC	2 cut(s)	294, 838
EarI	CTCTTC	2 cut(s)	294, 838
Eco130I	CCWWGG	2 cut(s)	163, 627
Eco31I	GGTCTC	1 cut(s)	1343
Eco32I	GATATC	1 cut(s)	472
EcoRII	CCWGG	3 cut(s)	274, 953, 1054
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	163, 627
EcoT22I	ATGCAT	1 cut(s)	1413
ErhI	CCWWGG	2 cut(s)	163, 627
FaeI	CATG	7 cut(s)	330, 409, 478, 631, 799, 1088, 1399
FalI	AAGNNNNNCTT	2 cut(s)	1437, 1469
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	7 cut(s)	326, 405, 474, 627, 795, 1084, 1395
FblI	GTMKAC	1 cut(s)	1292
Fnu4HI	GCNGC	3 cut(s)	498, 731, 936
FokI	GGATG	4 cut(s)	180, 368, 1061, 1420
Fsp4HI	GCNGC	3 cut(s)	498, 731, 936
FspBI	CTAG	5 cut(s)	99, 414, 489, 1011, 1473
GlaI	GCGC	1 cut(s)	1439
GluI	GCNGC	3 cut(s)	498, 731, 936
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	14, 116, 610
HapII	CCGG	2 cut(s)	81, 696
HhaI	GCGC	1 cut(s)	1440
Hin1II	CATG	7 cut(s)	330, 409, 478, 631, 799, 1088, 1399
Hin6I	GCGC	1 cut(s)	1438
HinP1I	GCGC	1 cut(s)	1438
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	1451
HinfI	GANTC	3 cut(s)	128, 222, 308
HpaII	CCGG	2 cut(s)	81, 696
HphI	GGTGA	2 cut(s)	781, 1240
Hpy166II	GTNNAC	3 cut(s)	486, 1231, 1293
Hpy188I	TCNGA	4 cut(s)	438, 461, 883, 1082
Hpy188III	TCNNGA	7 cut(s)	174, 204, 429, 696, 824, 1011, 1038
Hpy8I	GTNNAC	3 cut(s)	486, 1231, 1293
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	4 cut(s)	125, 150, 214, 912
HpyCH4IV	ACGT	1 cut(s)	1061
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 168, 177, 356, 365, 664
HpyF3I	CTNAG	4 cut(s)	458, 716, 1079, 1257
HpySE526I	ACGT	1 cut(s)	1061
Hsp92II	CATG	7 cut(s)	330, 409, 478, 631, 799, 1088, 1399
HspAI	GCGC	1 cut(s)	1438
Kpn2I	TCCGGA	1 cut(s)	695
Kzo9I	GATC	4 cut(s)	560, 878, 1031, 1040
LmnI	GCTCC	3 cut(s)	83, 176, 356
Lsp1109I	GCAGC	3 cut(s)	509, 742, 922
LweI	GCATC	7 cut(s)	158, 805, 1006, 1080, 1374, 1398, 1466
MaeI	CTAG	5 cut(s)	99, 414, 489, 1011, 1473
MaeII	ACGT	1 cut(s)	1061
MalI	GATC	4 cut(s)	562, 880, 1033, 1042
MboI	GATC	4 cut(s)	560, 878, 1031, 1040
MboII	GAAGA	8 cut(s)	97, 311, 436, 825, 828, 951, 1026, 1391
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	3 cut(s)	560, 1031, 1040
MhlI	GDGCHC	1 cut(s)	888
MnlI	CCTC	6 cut(s)	68, 499, 802, 841, 869, 1088
Mph1103I	ATGCAT	1 cut(s)	1413
MroI	TCCGGA	1 cut(s)	695
MroXI	GAANNNNTTC	2 cut(s)	181, 443
MseI	TTAA	5 cut(s)	9, 282, 987, 1121, 1463
MslI	CAYNNNNRTG	2 cut(s)	430, 794
MspA1I	CMGCKG	2 cut(s)	595, 733
MspI	CCGG	2 cut(s)	81, 696
MspR9I	CCNGG	4 cut(s)	82, 276, 955, 1056
MunI	CAATTG	1 cut(s)	773
MvaI	CCWGG	3 cut(s)	276, 955, 1056
MwoI	GCNNNNNNNGC	6 cut(s)	159, 168, 177, 356, 365, 664
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	4 cut(s)	560, 878, 1031, 1040
NlaIII	CATG	7 cut(s)	330, 409, 478, 631, 799, 1088, 1399
NlaIV	GGNNCC	3 cut(s)	79, 411, 609
NsiI	ATGCAT	1 cut(s)	1413
NspI	RCATGY	3 cut(s)	799, 1088, 1399
PciI	ACATGT	1 cut(s)	1395
PdmI	GAANNNNTTC	2 cut(s)	181, 443
PfeI	GAWTC	3 cut(s)	128, 222, 308
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	499, 732, 937
PscI	ACATGT	1 cut(s)	1395
PshBI	ATTAAT	1 cut(s)	1121
Psp6I	CCWGG	3 cut(s)	274, 953, 1054
PspGI	CCWGG	3 cut(s)	274, 953, 1054
PspN4I	GGNNCC	3 cut(s)	79, 411, 609
PspPI	GGNCC	1 cut(s)	608
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PstI	CTGCAG	2 cut(s)	940, 1165
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	3 cut(s)	560, 1031, 1040
PvuII	CAGCTG	2 cut(s)	595, 733
RsaI	GTAC	4 cut(s)	211, 319, 1060, 1223
RsaNI	GTAC	4 cut(s)	210, 318, 1059, 1222
RseI	CAYNNNNRTG	2 cut(s)	430, 794
SaqAI	TTAA	5 cut(s)	9, 282, 987, 1121, 1463
SatI	GCNGC	3 cut(s)	498, 731, 936
Sau3AI	GATC	4 cut(s)	560, 878, 1031, 1040
Sau96I	GGNCC	1 cut(s)	608
ScrFI	CCNGG	4 cut(s)	82, 276, 955, 1056
SduI	GDGCHC	1 cut(s)	888
SfaNI	GCATC	7 cut(s)	158, 805, 1006, 1080, 1374, 1398, 1466
SfcI	CTRYAG	2 cut(s)	936, 1161
SmiMI	CAYNNNNRTG	2 cut(s)	430, 794
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SpeI	ACTAGT	1 cut(s)	1472
SsiI	CCGC	2 cut(s)	401, 656
SspI	AATATT	2 cut(s)	105, 930
SspMI	CTAG	5 cut(s)	99, 414, 489, 1011, 1473
StyD4I	CCNGG	4 cut(s)	80, 274, 953, 1054
StyI	CCWWGG	2 cut(s)	163, 627
TaaI	ACNGT	4 cut(s)	125, 150, 214, 912
TaiI	ACGT	1 cut(s)	1064
TatI	WGTACW	2 cut(s)	209, 317
TfiI	GAWTC	3 cut(s)	128, 222, 308
Tru1I	TTAA	5 cut(s)	9, 282, 987, 1121, 1463
Tru9I	TTAA	5 cut(s)	9, 282, 987, 1121, 1463
TscAI	CASTG	6 cut(s)	472, 811, 909, 915, 1258, 1375
TseI	GCWGC	3 cut(s)	497, 730, 935
TspDTI	ATGAA	4 cut(s)	370, 687, 1107, 1407
TspRI	CASTG	6 cut(s)	472, 811, 909, 915, 1258, 1375
VspI	ATTAAT	1 cut(s)	1121
XapI	RAATTY	2 cut(s)	440, 1383
XbaI	TCTAGA	1 cut(s)	1010
XceI	RCATGY	3 cut(s)	799, 1088, 1399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1189
XmiI	GTMKAC	1 cut(s)	1292
XmnI	GAANNNNTTC	2 cut(s)	181, 443
XspI	CTAG	5 cut(s)	99, 414, 489, 1011, 1473
Zsp2I	ATGCAT	1 cut(s)	1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.