Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008140

Physical Location & Seq

Genomic Coordinates Reverse (-)

29026837 .. 29027855

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTCAAAAGACCAGAAGACAAGCAGATCGCTCAGATGTCTGAAGAACACCTATCGGAGACTCTAGAGAGCGCTATAGGATGCCCAATTATTCTAAATATGAGCCTAGAGCCTGTGGACTTGAAAATCTCAGACGAAAACTCGGCCTCCAGTTATCAGACACAGCTAGTAGAGAGCAGTCATTTTAACCATGGAACAAAATTTGTTCCTGAACCTGTTTATGAAGTAGATCTTGGAGCTGCAATGCAACACAGTGGTCAGATGAAAACCTTCTCCTTAAACAGAGAGCAAGTTAAGGCCAACAAAGCTGATGGCTGCAAACTGATATCTAAAAGGCAAGACAAATACAGTACAAGCATAAAGGAGGAAACCATTGCTCAGCCACAGGAGATAACACCCTTCAATGATCTTTTAAGACAAAAGAACCAAGAGGATGCATCTATTGATTCGATAACAGATTGTTTGAATTCTCTGATGGACACAACTCGTACAATGAGGACACAAAGGCCCCAGAAGAAGTGGTTGTCTGTATCCTCTGCTCAACGAAGTGACGCAAGCATTGAACCATACAGTCAAGATATATCGTTTGACAATGCAAAGACAAAGATAAAGAGAAGTGCAAAATCCCAAAAGCTTCCAAAAGCATTCTTTAAGGTTAAAGAACTTCATGATTCTCAAGATGGTCCAAGAAACAGAGGCCTGCACTGCAGCTGGAGTTGCAAGGATATATCCTGTCAGCAGAAGTCAAAAACAAAAAATCACATAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

256

Amino Acids

29.0

Weight (kDa)

8.43

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008140)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27010
rosa_chinensis	RchiOBHm_Chr7g0217971
rosa_laevigata	RLG00000002428
rosa_multiflora	Rmu_co8458853.1_g000001 Rmu_sc0014729.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241570 Rroxscaffold_3G00241580 Rroxscaffold_3G00241590
rosa_rugosa	Rorug07G0172500
rosa_samantha	Rh7AG314700 Rh7AG314800 Rh7AG314900 Rh7BG305000 Rh7BG305100 Rh7BG305200 Rh7BG305300 Rh7CG332200 Rh7CG332300 Rh7CG332400 Rh7DG312900 Rh7DG313000 Rh7DG313100
rosa_wichuraiana	Rw0G017310 Rw7G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	200, 466
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	2 cut(s)	352, 490
AfeI	AGCGCT	1 cut(s)	73
AgsI	TTSAA	5 cut(s)	7, 124, 403, 466, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	5 cut(s)	166, 239, 308, 634, 711
AluI	AGCT	5 cut(s)	166, 239, 308, 634, 711
Alw26I	GTCTC	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	4 cut(s)	144, 297, 506, 697
ApeKI	GCWGC	3 cut(s)	239, 315, 708
ApoI	RAATTY	2 cut(s)	200, 466
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	507, 683
AvaII	GGWCC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	226, 302, 720
BccI	CCATC	3 cut(s)	305, 469, 674
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	65, 107, 167
BfmI	CTRYAG	2 cut(s)	75, 706
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	3 cut(s)	240, 316, 709
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	3 cut(s)	241, 317, 710
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	507, 683
BmiI	GGNNCC	1 cut(s)	509
BmsI	GCATC	3 cut(s)	71, 424, 446
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	133, 733
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	2 cut(s)	249, 372
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	86, 439
BseMI	GCAATG	2 cut(s)	249, 372
BseMII	CTCAG	3 cut(s)	47, 144, 392
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	226, 302, 720
BsgI	GTGCAG	1 cut(s)	686
BshFI	GGCC	4 cut(s)	146, 299, 508, 699
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	4 cut(s)	146, 299, 508, 699
Bsp143I	GATC	3 cut(s)	27, 229, 406
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	190
BspANI	GGCC	4 cut(s)	146, 299, 508, 699
BspCNI	CTCAG	3 cut(s)	46, 143, 391
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	509
BspMAI	CTGCAG	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	249, 372
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	27, 229, 406
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	254, 350, 572
BstC8I	GCNNGC	2 cut(s)	556, 701
BstDEI	CTNAG	3 cut(s)	33, 130, 378
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	86, 439
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	30, 232, 409
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	27, 229, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 705, 717
BstSFI	CTRYAG	2 cut(s)	75, 706
BstV1I	GCAGC	3 cut(s)	226, 302, 720
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	146, 299, 508, 699
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	86, 439
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	259, 703
Cac8I	GCNNGC	2 cut(s)	556, 701
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	507, 683
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	351, 489
CviAII	CATG	3 cut(s)	191, 668, 768
CviQI	GTAC	2 cut(s)	351, 489
DdeI	CTNAG	3 cut(s)	33, 130, 378
DpnI	GATC	3 cut(s)	29, 231, 408
DpnII	GATC	3 cut(s)	27, 229, 406
Eco130I	CCWWGG	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	699
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	683
Eco47III	AGCGCT	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	194, 671, 771
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	3 cut(s)	190, 667, 767
Fnu4HI	GCNGC	3 cut(s)	240, 316, 709
FokI	GGATG	2 cut(s)	93, 446
Fsp4HI	GCNGC	3 cut(s)	240, 316, 709
FspBI	CTAG	3 cut(s)	65, 107, 167
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	240, 316, 709
GsuI	CTGGAG	2 cut(s)	133, 733
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	146, 299, 508, 699
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	194, 671, 771
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	3 cut(s)	61, 446, 671
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	7 cut(s)	36, 43, 58, 133, 159, 261, 474
Hpy188III	TCNNGA	5 cut(s)	65, 209, 575, 668, 677
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	280, 409
HpyCH4III	ACNGT	3 cut(s)	254, 350, 572
HpyCH4V	TGCA	9 cut(s)	242, 247, 318, 437, 596, 620, 703, 708, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 705, 717
HpyF3I	CTNAG	3 cut(s)	33, 130, 378
Hsp92II	CATG	3 cut(s)	194, 671, 771
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	27, 229, 406
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	3 cut(s)	226, 302, 720
LweI	GCATC	3 cut(s)	71, 424, 446
MaeI	CTAG	3 cut(s)	65, 107, 167
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	29, 231, 408
MboI	GATC	3 cut(s)	27, 229, 406
MboII	GAAGA	3 cut(s)	29, 56, 526
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	3 cut(s)	87, 200, 466
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	157, 358, 424, 489, 544, 689
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
MspA1I	CMGCKG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	3 cut(s)	305, 705, 717
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	3 cut(s)	27, 229, 406
NlaIII	CATG	3 cut(s)	194, 671, 771
NlaIV	GGNNCC	1 cut(s)	509
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	439
PagI	TCATGA	1 cut(s)	667
PceI	AGGCCT	1 cut(s)	699
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	446, 671
PkrI	GCNGC	3 cut(s)	241, 317, 710
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	2 cut(s)	507, 683
PstI	CTGCAG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	711
RsaI	GTAC	2 cut(s)	352, 490
RsaNI	GTAC	2 cut(s)	351, 489
SaqAI	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
SatI	GCNGC	3 cut(s)	240, 316, 709
Sau3AI	GATC	3 cut(s)	27, 229, 406
Sau96I	GGNCC	2 cut(s)	507, 683
SchI	GAGTC	1 cut(s)	55
SetI	ASST	9 cut(s)	54, 168, 217, 241, 272, 310, 636, 657, 713
SfaNI	GCATC	3 cut(s)	71, 424, 446
SfcI	CTRYAG	2 cut(s)	75, 706
SinI	GGWCC	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	3 cut(s)	87, 200, 466
SseBI	AGGCCT	1 cut(s)	699
SspMI	CTAG	3 cut(s)	65, 107, 167
StuI	AGGCCT	1 cut(s)	699
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	254, 350, 572
TaqI	TCGA	1 cut(s)	449
TasI	AATT	3 cut(s)	87, 200, 466
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	446, 671
Tru1I	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
Tru9I	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
TscAI	CASTG	2 cut(s)	259, 710
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	3 cut(s)	239, 315, 708
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	237, 278, 656
TspRI	CASTG	2 cut(s)	259, 710
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	2 cut(s)	200, 466
XbaI	TCTAGA	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	3 cut(s)	65, 107, 167
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.