Rh7CG332300

DNA polymerase III, delta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008140
Physical Location & Seq
Reverse (-)
36776607 .. 36777587
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG332300.1

Sequence Viewer

Length: 981 bp
ATGGCACTTTCCGGAGACACTATGCAAACCCTGAGATGTGCAAGGCAGCTGATTGGAACTGGTATTGAACCACAAATGTTTGTATCACAATTGGTTTCGCACATCACCAACATGCTTTTCAGTAAGGCTGATGCTGTTCCTGAAACCTCTTCTTCTACTCACTTATCTACAGATAAGGAACTTCTGCAAGGAGGATCAGAGCACAGTAAGCTGCATCCAATAATTTTCATATCAGTATACATAAATCAAAACACACACACACACACACACAATACACACATATACATATATACACACAGTATAATCATACTTACATTAGAGGACATTTTTACATCATTGATTCGTTTAACCAATATTGCAGAAAATAATCAATCAGTGGCACTGTGTTGTGCCTTACAAATATTATCTGCAGTAGAGAAGCAACCCAGGTCTTCAACTGACCAAACCTTGCAGATATTTAATGCTCTTTTACAAATTGCTTCTACAGATGCTTCCAGCAAAAGATCTTCTGGACCTGTCCTATCCCCAGGTACGTTCAAGTGCATCATCCTCAGACATGCAATTTCTATCTGGGAACAAAAATCAGTTTCATTAATTGAGTTGAAGTTAGCACAACTTATAACAGTTTTGTCTGCAGTAGCAGATTACAAGTCCAATGCAGAAATGGAGTTGCATAGCCTAACGCACAGCAGGTATTTGGTGAACCACATTGCCATCAGCAACACTGCTGAGCAACAAGAGATGGACAATACGAAACAAAAGTCTACCATCAAAAGCATTGCGAAACAGACAAATTGCAGAAACAAGGCAGTTGATGGAGAGACCCACTTTACTTGCATCAGTGAAATGGAAGAAATTTGGCTAAACATGTTGGGCAGGATGCATAGTTCATATTTGAAAGACTTTTTGCGCCACAAAGTGAAGCTTGCATCATTAACTATAACTAGTGGTAAAGCACTTTTACTCTACACTAGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

326

Amino Acids

36.29

Weight (kDa)

7.73

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaA_N-like_STI PF23007 281 - 319 5.9e-07 STICHEL, DnaA_N-like alpha-beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 681
AccI GTMKAC 2 cut(s) 237, 764
AccIII TCCGGA 1 cut(s) 11
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 855
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 1 cut(s) 532
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 5 cut(s) 68, 435, 538, 604, 898
AhlI ACTAGT 1 cut(s) 944
AjnI CCWGG 2 cut(s) 425, 526
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AloI GAACNNNNNNTCC 2 cut(s) 871, 903
AluBI AGCT 3 cut(s) 49, 211, 925
AluI AGCT 3 cut(s) 49, 211, 925
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 9, 815
AlwI GGATC 1 cut(s) 202
Aor13HI TCCGGA 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 46, 211
ApoI RAATTY 1 cut(s) 855
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AseI ATTAAT 1 cut(s) 593
AspLEI GCGC 1 cut(s) 912
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 97, 712
AvaII GGWCC 1 cut(s) 512
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 58, 198
BccI CCATC 4 cut(s) 722, 736, 776, 809
BciT130I CCWGG 2 cut(s) 427, 528
BcoDI GTCTC 2 cut(s) 9, 815
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 2 cut(s) 945, 972
BfmI CTRYAG 4 cut(s) 168, 408, 483, 633
BfuAI ACCTGC 1 cut(s) 681
BglII AGATCT 1 cut(s) 503
BisI GCNGC 2 cut(s) 47, 212
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 2 cut(s) 48, 213
Bme1390I CCNGG 2 cut(s) 427, 528
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmrFI CCNGG 2 cut(s) 427, 528
BmsI GCATC 7 cut(s) 121, 223, 478, 552, 846, 870, 938
BpiI GAAGAC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 2 cut(s) 425, 526
BsaWI WCCGGW 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 2 cut(s) 708, 777
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 2 cut(s) 427, 528
BseDI CCNNGG 2 cut(s) 425, 526
BseGI GGATG 3 cut(s) 214, 546, 885
BseMI GCAATG 2 cut(s) 708, 777
BseMII CTCAG 3 cut(s) 23, 565, 720
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 58, 198
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 9, 815
Bso31I GGTCTC 1 cut(s) 815
Bsp1286I GDGCHC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 2 cut(s) 194, 503
Bsp1720I GCTNAGC 1 cut(s) 729
BspCNI CTCAG 3 cut(s) 24, 564, 721
BspEI TCCGGA 1 cut(s) 11
BspMAI CTGCAG 2 cut(s) 412, 637
BspMI ACCTGC 1 cut(s) 681
BspPI GGATC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 815
BsrDI GCAATG 2 cut(s) 708, 777
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 425, 526
BssMI GATC 2 cut(s) 194, 503
BssNAI GTATAC 1 cut(s) 238
Bst1107I GTATAC 1 cut(s) 238
Bst2UI CCWGG 2 cut(s) 427, 528
Bst4CI ACNGT 4 cut(s) 206, 299, 384, 625
Bst6I CTCTTC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 927
BstDEI CTNAG 3 cut(s) 32, 551, 729
BstF5I GGATG 3 cut(s) 214, 546, 885
BstHHI GCGC 1 cut(s) 912
BstKTI GATC 2 cut(s) 197, 506
BstMAI GTCTC 2 cut(s) 9, 815
BstMBI GATC 2 cut(s) 194, 503
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 2 cut(s) 427, 528
BstNSI RCATGY 3 cut(s) 115, 560, 871
BstSCI CCNGG 2 cut(s) 425, 526
BstSFI CTRYAG 4 cut(s) 168, 408, 483, 633
BstV1I GCAGC 2 cut(s) 58, 198
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZ17I GTATAC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 214, 546, 885
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 4 cut(s) 380, 381, 723, 847
BveI ACCTGC 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 927
CfoI GCGC 1 cut(s) 912
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 531
CspCI CAANNNNNGTGG 2 cut(s) 815, 850
CviAII CATG 3 cut(s) 112, 557, 868
CviJI RGCY 6 cut(s) 49, 128, 211, 678, 862, 925
CviKI_1 RGCY 6 cut(s) 49, 128, 211, 678, 862, 925
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 3 cut(s) 32, 551, 729
DpnI GATC 2 cut(s) 196, 505
DpnII GATC 2 cut(s) 194, 503
DraIII CACNNNGTG 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 815
Eco47I GGWCC 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 425, 526
EcoT22I ATGCAT 1 cut(s) 885
FaeI CATG 3 cut(s) 115, 560, 871
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FatI CATG 3 cut(s) 111, 556, 867
FblI GTMKAC 2 cut(s) 237, 764
Fnu4HI GCNGC 2 cut(s) 47, 212
FokI GGATG 3 cut(s) 201, 533, 892
Fsp4HI GCNGC 2 cut(s) 47, 212
FspBI CTAG 2 cut(s) 945, 972
GlaI GCGC 1 cut(s) 911
GluI GCNGC 2 cut(s) 47, 212
HapII CCGG 1 cut(s) 12
HhaI GCGC 1 cut(s) 912
Hin1II CATG 3 cut(s) 115, 560, 871
Hin6I GCGC 1 cut(s) 910
HinP1I GCGC 1 cut(s) 910
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 1 cut(s) 340
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 97, 712
Hpy166II GTNNAC 3 cut(s) 238, 703, 765
Hpy188I TCNGA 2 cut(s) 199, 554
Hpy188III TCNNGA 3 cut(s) 12, 140, 510
Hpy8I GTNNAC 3 cut(s) 238, 703, 765
HpyCH4III ACNGT 4 cut(s) 206, 299, 384, 625
HpyCH4IV ACGT 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 3 cut(s) 32, 551, 729
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 3 cut(s) 115, 560, 871
HspAI GCGC 1 cut(s) 910
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 2 cut(s) 194, 503
Lsp1109I GCAGC 2 cut(s) 58, 198
LweI GCATC 7 cut(s) 121, 223, 478, 552, 846, 870, 938
MaeI CTAG 2 cut(s) 945, 972
MaeII ACGT 1 cut(s) 533
MalI GATC 2 cut(s) 196, 505
MboI GATC 2 cut(s) 194, 503
MboII GAAGA 5 cut(s) 141, 144, 423, 498, 863
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 7 cut(s) 89, 222, 474, 561, 594, 793, 855
MnlI CCTC 4 cut(s) 157, 185, 313, 560
Mph1103I ATGCAT 1 cut(s) 885
MroI TCCGGA 1 cut(s) 11
MseI TTAA 4 cut(s) 347, 459, 593, 935
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 427, 528
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 2 cut(s) 427, 528
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 2 cut(s) 194, 503
NlaIII CATG 3 cut(s) 115, 560, 871
NsiI ATGCAT 1 cut(s) 885
NspI RCATGY 3 cut(s) 115, 560, 871
PciI ACATGT 1 cut(s) 867
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 48, 213
PscI ACATGT 1 cut(s) 867
PshBI ATTAAT 1 cut(s) 593
PsiI TTATAA 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 425, 526
PspGI CCWGG 2 cut(s) 425, 526
PspPI GGNCC 1 cut(s) 512
PstI CTGCAG 2 cut(s) 412, 637
PsuI RGATCY 1 cut(s) 503
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 4 cut(s) 347, 459, 593, 935
SatI GCNGC 2 cut(s) 47, 212
Sau3AI GATC 2 cut(s) 194, 503
Sau96I GGNCC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 427, 528
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 7 cut(s) 121, 223, 478, 552, 846, 870, 938
SfcI CTRYAG 4 cut(s) 168, 408, 483, 633
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 110
SpeI ACTAGT 1 cut(s) 944
Sse9I AATT 7 cut(s) 89, 222, 474, 561, 594, 793, 855
SspI AATATT 2 cut(s) 355, 402
SspMI CTAG 2 cut(s) 945, 972
StyD4I CCNGG 2 cut(s) 425, 526
TaaI ACNGT 4 cut(s) 206, 299, 384, 625
TaiI ACGT 1 cut(s) 536
TasI AATT 7 cut(s) 89, 222, 474, 561, 594, 793, 855
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 4 cut(s) 347, 459, 593, 935
Tru9I TTAA 4 cut(s) 347, 459, 593, 935
TscAI CASTG 4 cut(s) 381, 387, 730, 847
TseI GCWGC 2 cut(s) 46, 211
TspDTI ATGAA 3 cut(s) 217, 579, 879
TspRI CASTG 4 cut(s) 381, 387, 730, 847
VpaK11BI GGWCC 1 cut(s) 512
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 1 cut(s) 855
XceI RCATGY 3 cut(s) 115, 560, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmiI GTMKAC 2 cut(s) 237, 764
XspI CTAG 2 cut(s) 945, 972
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.