Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014729.1

Orthogroup ID

OG0008140

Physical Location & Seq

Genomic Coordinates Forward (+)

177 .. 881

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgttcaaaagaccagaagacaagcagatcgctcagatgtctgaagaacacctatcggagactctagagagcgctataggatgcccaattattctaaatatgagcctagagcctgtggacttgaaaatctcagacgaaaactcggcctccagttatcagacacagctagtggagagcagtcattttaaccatggaacaaaatttgttcctgaacctgtttatgaagtagatcttggagctgcaatgcaacacaatggtcatatgaaaaccttctccttaaacagagagcaagttaaggccaacaaagctgatggctgcaaactgatatctaaaaggcaagacaaatacagtacaagcataaaggaggaaaccattgctcagccacaggagataacacccttcaatgatcttttaagacaaaagaaccaagaggatgcgtctattgatttgataacagattgtttgagttctctgatggacacaacttgtacaatgaggacacaaaggccccagaagaagtggttgtctgtatcctctgctcaacgaagtgacgcaagcattgaaccatacagtcaagatatatcgtttgacaatgcaaagacaaagataaagagaagtgcaaaatcccaaaagcttccaaaagcattctttaaggttaaagaacttcatgattctcaagatggtccaagaaacaggtacatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

234

Amino Acids

26.57

Weight (kDa)

6.6

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008140)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27010
rosa_chinensis	RchiOBHm_Chr7g0217971
rosa_laevigata	RLG00000002428
rosa_multiflora	Rmu_co8458853.1_g000001 Rmu_sc0014729.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241570 Rroxscaffold_3G00241580 Rroxscaffold_3G00241590
rosa_rugosa	Rorug07G0172500
rosa_samantha	Rh7AG314700 Rh7AG314800 Rh7AG314900 Rh7BG305000 Rh7BG305100 Rh7BG305200 Rh7BG305300 Rh7CG332200 Rh7CG332300 Rh7CG332400 Rh7DG312900 Rh7DG313000 Rh7DG313100
rosa_wichuraiana	Rw0G017310 Rw7G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	3 cut(s)	352, 490, 698
AfeI	AGCGCT	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	7, 124, 403, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	4 cut(s)	166, 239, 308, 634
AluI	AGCT	4 cut(s)	166, 239, 308, 634
Alw26I	GTCTC	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	3 cut(s)	144, 297, 506
ApeKI	GCWGC	2 cut(s)	239, 315
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	507, 683
AvaII	GGWCC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	226, 302
BccI	CCATC	3 cut(s)	305, 469, 674
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	65, 107, 167
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	2 cut(s)	240, 316
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	2 cut(s)	241, 317
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	507, 683
BmiI	GGNNCC	1 cut(s)	509
BmsI	GCATC	2 cut(s)	71, 424
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	2 cut(s)	249, 372
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	86, 439
BseMI	GCAATG	2 cut(s)	249, 372
BseMII	CTCAG	3 cut(s)	47, 144, 392
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	226, 302
BshFI	GGCC	3 cut(s)	146, 299, 508
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	3 cut(s)	146, 299, 508
Bsp1407I	TGTACA	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	27, 229, 406
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	190
BspANI	GGCC	3 cut(s)	146, 299, 508
BspCNI	CTCAG	3 cut(s)	46, 143, 391
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	249, 372
BsrGI	TGTACA	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	27, 229, 406
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	350, 572
BstAUI	TGTACA	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	3 cut(s)	33, 130, 378
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	86, 439
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	30, 232, 409
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	27, 229, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	226, 302
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	3 cut(s)	146, 299, 508
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	86, 439
Cac8I	GCNNGC	1 cut(s)	556
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	507, 683
CseI	GACGC	2 cut(s)	426, 560
Csp6I	GTAC	3 cut(s)	351, 489, 697
CviAII	CATG	2 cut(s)	191, 668
CviQI	GTAC	3 cut(s)	351, 489, 697
DdeI	CTNAG	3 cut(s)	33, 130, 378
DpnI	GATC	3 cut(s)	29, 231, 408
DpnII	GATC	3 cut(s)	27, 229, 406
Eco130I	CCWWGG	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	683
Eco47III	AGCGCT	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	194, 671
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	2 cut(s)	190, 667
FauNDI	CATATG	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	240, 316
FokI	GGATG	2 cut(s)	93, 446
Fsp4HI	GCNGC	2 cut(s)	240, 316
FspBI	CTAG	3 cut(s)	65, 107, 167
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	240, 316
GsuI	CTGGAG	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	146, 299, 508
HgaI	GACGC	2 cut(s)	426, 560
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	194, 671
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	2 cut(s)	61, 671
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	6 cut(s)	36, 43, 58, 133, 159, 474
Hpy188III	TCNNGA	5 cut(s)	65, 209, 575, 668, 677
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	280, 409
HpyCH4III	ACNGT	2 cut(s)	350, 572
HpyCH4V	TGCA	5 cut(s)	242, 247, 318, 596, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	3 cut(s)	33, 130, 378
Hsp92II	CATG	2 cut(s)	194, 671
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	27, 229, 406
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	8 cut(s)	27, 126, 163, 222, 228, 371, 524, 679
Lsp1109I	GCAGC	2 cut(s)	226, 302
LweI	GCATC	2 cut(s)	71, 424
MaeI	CTAG	3 cut(s)	65, 107, 167
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	29, 231, 408
MboI	GATC	3 cut(s)	27, 229, 406
MboII	GAAGA	3 cut(s)	29, 56, 526
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	2 cut(s)	87, 200
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	157, 358, 424, 489, 544
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	3 cut(s)	27, 229, 406
NlaIII	CATG	2 cut(s)	194, 671
NlaIV	GGNNCC	1 cut(s)	509
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	548
PagI	TCATGA	1 cut(s)	667
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	241, 317
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	2 cut(s)	507, 683
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	3 cut(s)	352, 490, 698
RsaNI	GTAC	3 cut(s)	351, 489, 697
SaqAI	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
SatI	GCNGC	2 cut(s)	240, 316
Sau3AI	GATC	3 cut(s)	27, 229, 406
Sau96I	GGNCC	2 cut(s)	507, 683
SchI	GAGTC	1 cut(s)	55
SetI	ASST	9 cut(s)	54, 168, 217, 241, 272, 310, 636, 657, 698
SfaNI	GCATC	2 cut(s)	71, 424
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	2 cut(s)	87, 200
SspMI	CTAG	3 cut(s)	65, 107, 167
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	350, 572
TasI	AATT	2 cut(s)	87, 200
TatI	WGTACW	2 cut(s)	350, 488
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
Tru9I	TTAA	6 cut(s)	186, 278, 294, 413, 651, 657
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	2 cut(s)	239, 315
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	237, 278, 656
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	3 cut(s)	65, 107, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.