RLG00000003162

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012700
Physical Location & Seq
Reverse (-)
45081444 .. 45082150
707 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003162

Sequence Viewer

Length: 453 bp
ATGGCTAATGCCATAGATGACTTTGTTGTTGCTTTCGCTCTCTCCGCTGCATCTCGTGCTAAACCTCGGCTGAGATGGGACCTTTTCGGGCTTGGATCTAGTTCGGGTGATGGTGGCGTTGAAGACAAGTTTGGTTCATCTCCTGTGCAACGGTGGGCAGCGTTACTTGGCTTTGGTATGGCTGCTCAAGTTACAGATTCAGATGGTGCTGAAGGTGAGGACAACAACAGCTGGGCTGTTGAAGACGGAGTTGGTACTGGCAGCATTGGCTGTAGAGATGGACGTGGTGGTGGGGGTTGGTGTGGCAGCATCGCTGCTTCTTCCCCTCCTCTATCCAAAGCTTTGATTGATTGGGCCACTTGGGCCTTGAACTATTCTGTGGGCCTTTTCTATGGGCTCATTGGATTGCTCTGTTGGATGGAATGGGCCTTTATGGCTCATAATACTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.66

Weight (kDa)

4.42

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 3 cut(s) 122, 242, 370
AjiI CACGTC 1 cut(s) 284
AjuI GAANNNNNNNTTGG 4 cut(s) 114, 146, 234, 266
AluBI AGCT 2 cut(s) 231, 341
AluI AGCT 2 cut(s) 231, 341
AlwI GGATC 1 cut(s) 103
AoxI GGCC 4 cut(s) 354, 363, 382, 426
ApeKI GCWGC 6 cut(s) 47, 158, 182, 261, 306, 314
AspS9I GGNCC 5 cut(s) 79, 354, 363, 382, 426
AsuHPI GGTGA 2 cut(s) 119, 227
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 129, 249
BbvI GCAGC 6 cut(s) 34, 169, 170, 273, 301, 318
BccI CCATC 5 cut(s) 69, 104, 197, 272, 412
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 271
BglI GCCNNNNNGGC 2 cut(s) 362, 434
BisI GCNGC 6 cut(s) 48, 159, 183, 262, 307, 315
BlsI GCNGC 6 cut(s) 49, 160, 184, 263, 308, 316
Bme18I GGWCC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 284
BmgT120I GGNCC 5 cut(s) 79, 354, 363, 382, 426
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 2 cut(s) 59, 318
BpiI GAAGAC 2 cut(s) 129, 249
BpuEI CTTGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 318
BseXI GCAGC 6 cut(s) 34, 169, 170, 273, 301, 318
BseYI CCCAGC 1 cut(s) 231
BshFI GGCC 4 cut(s) 356, 365, 384, 428
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 4 cut(s) 356, 365, 384, 428
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 1 cut(s) 45
BspANI GGCC 4 cut(s) 356, 365, 384, 428
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 153, 448
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 423
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstMWI GCNNNNNNNGC 5 cut(s) 44, 56, 267, 362, 434
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 6 cut(s) 34, 169, 170, 273, 301, 318
BstV2I GAAGAC 2 cut(s) 129, 249
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 4 cut(s) 356, 365, 384, 428
BtgZI GCGATG 1 cut(s) 295
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 423
Cfr13I GGNCC 5 cut(s) 79, 354, 363, 382, 426
Csp6I GTAC 1 cut(s) 255
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 399
FaiI YATR 5 cut(s) 14, 179, 393, 434, 441
FaqI GGGAC 1 cut(s) 92
Fnu4HI GCNGC 6 cut(s) 48, 159, 183, 262, 307, 315
FokI GGATG 1 cut(s) 430
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 6 cut(s) 48, 159, 183, 262, 307, 315
FspBI CTAG 1 cut(s) 99
GluI GCNGC 6 cut(s) 48, 159, 183, 262, 307, 315
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 4 cut(s) 356, 365, 384, 428
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 1 cut(s) 197
HphI GGTGA 2 cut(s) 119, 227
Hpy188I TCNGA 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 153, 448
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 50, 148
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 56, 267, 362, 434
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 283
Kzo9I GATC 1 cut(s) 95
LpnPI CCDG 3 cut(s) 156, 217, 243
Lsp1109I GCAGC 6 cut(s) 34, 169, 170, 273, 301, 318
LweI GCATC 2 cut(s) 59, 318
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 162, 190
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 3 cut(s) 134, 254, 312
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 4 cut(s) 75, 211, 336, 339
MseI TTAA 1 cut(s) 451
MspA1I CMGCKG 2 cut(s) 47, 231
MwoI GCNNNNNNNGC 5 cut(s) 44, 56, 267, 362, 434
NdeII GATC 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 80
NmeAIII GCCGAG 1 cut(s) 46
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 6 cut(s) 49, 160, 184, 263, 308, 316
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 5 cut(s) 79, 354, 363, 382, 426
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 231
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 6 cut(s) 48, 159, 183, 262, 307, 315
Sau3AI GATC 1 cut(s) 95
Sau96I GGNCC 5 cut(s) 79, 354, 363, 382, 426
SduI GDGCHC 1 cut(s) 399
SetI ASST 6 cut(s) 67, 84, 217, 233, 286, 343
SfaNI GCATC 2 cut(s) 59, 318
SfcI CTRYAG 1 cut(s) 271
SfiI GGCCNNNNNGGCC 1 cut(s) 362
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 153, 448
TaiI ACGT 1 cut(s) 286
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TseI GCWGC 6 cut(s) 47, 158, 182, 261, 306, 314
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 79
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.