Rh1BG011400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012700
Physical Location & Seq
Forward (+)
1364751 .. 1368030
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG011400.1

Sequence Viewer

Length: 293 bp
ATGCTCGCATTCGAGGATTGGCATCTTGTACTTGACTTGGAGATCAGAGTGGAGAAGAGCACCTTTGTTTATTGGCCAGGTGGAGGGAAGAGTACCTATAAAAGGGCAGGTATCTGGGGCTTTGAACAGCGGGTTCGGATCCTATTCCAACCGGGCGCCCGGAATCCCGTACCGGATGGTCAAGTACGGAAGAGTCCAAGGGATGACTCATTTGTTCGGGCGACGCCTGCCCGTAAGGCTCCTGGTGATATCAGGGGCTTTGTAGAACCAAGGGAGGTTCATGCAGATTCCAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.07

Weight (kDa)

9.59

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 1 cut(s) 130
AclWI GGATC 2 cut(s) 133, 146
AcoI YGGCCR 1 cut(s) 74
AcyI GRCGYC 2 cut(s) 156, 224
AfaI GTAC 4 cut(s) 30, 94, 171, 186
AfiI CCNNNNNNNGG 2 cut(s) 83, 102
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 2 cut(s) 76, 241
Alw21I GWGCWC 1 cut(s) 62
AlwI GGATC 2 cut(s) 133, 146
AoxI GGCC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 158
AsuC2I CCSGG 2 cut(s) 153, 160
AsuHPI GGTGA 1 cut(s) 257
BalI TGGCCA 1 cut(s) 76
BamHI GGATCC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 78, 243
BcnI CCSGG 2 cut(s) 153, 160
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 236
Bme1390I CCNGG 4 cut(s) 78, 153, 160, 243
BmiI GGNNCC 3 cut(s) 140, 157, 240
BmrFI CCNGG 4 cut(s) 78, 153, 160, 243
BmsI GCATC 1 cut(s) 31
BpuMI CCSGG 2 cut(s) 153, 160
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 156, 224
BsaJI CCNNGG 2 cut(s) 197, 269
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 102
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 2 cut(s) 78, 243
BseDI CCNNGG 2 cut(s) 197, 269
BseGI GGATG 2 cut(s) 181, 208
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 83, 102
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 3 cut(s) 152, 160, 173
BslI CCNNNNNNNGG 2 cut(s) 83, 102
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 42, 138
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 140, 157, 240
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 2 cut(s) 133, 146
BspQI GCTCTTC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 197, 269
BssMI GATC 2 cut(s) 42, 138
BssNI GRCGYC 2 cut(s) 156, 224
BssT1I CCWWGG 2 cut(s) 197, 269
Bst2UI CCWGG 2 cut(s) 78, 243
Bst6I CTCTTC 3 cut(s) 50, 83, 185
BstACI GRCGYC 2 cut(s) 156, 224
BstC8I GCNNGC 2 cut(s) 6, 228
BstENI CCTNNNNNAGG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 181, 208
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 45, 141
BstMBI GATC 2 cut(s) 42, 138
BstMWI GCNNNNNNNGC 2 cut(s) 227, 236
BstNI CCWGG 2 cut(s) 78, 243
BstSCI CCNGG 4 cut(s) 76, 151, 158, 241
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 181, 208
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 2 cut(s) 6, 228
CfoI GCGC 1 cut(s) 158
CseI GACGC 1 cut(s) 232
Csp6I GTAC 4 cut(s) 29, 93, 170, 185
CviAII CATG 1 cut(s) 281
CviJI RGCY 4 cut(s) 76, 120, 239, 258
CviKI_1 RGCY 4 cut(s) 76, 120, 239, 258
CviQI GTAC 4 cut(s) 29, 93, 170, 185
DinI GGCGCC 1 cut(s) 157
DpnI GATC 2 cut(s) 44, 140
DpnII GATC 2 cut(s) 42, 138
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 3 cut(s) 50, 83, 185
EarI CTCTTC 3 cut(s) 50, 83, 185
Eco130I CCWWGG 2 cut(s) 197, 269
Eco32I GATATC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 76, 241
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 197, 269
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 197, 269
FaeI CATG 1 cut(s) 284
FaiI YATR 2 cut(s) 99, 282
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 1 cut(s) 280
FauI CCCGC 1 cut(s) 123
FokI GGATG 2 cut(s) 188, 215
GlaI GCGC 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 1 cut(s) 76
HapII CCGG 3 cut(s) 152, 160, 173
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 2 cut(s) 156, 224
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 4 cut(s) 163, 193, 206, 287
HpaII CCGG 3 cut(s) 152, 160, 173
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 47, 138
Hpy99I CGWCG 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 236
Hsp92I GRCGYC 2 cut(s) 156, 224
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 1 cut(s) 156
KasI GGCGCC 1 cut(s) 155
Kzo9I GATC 2 cut(s) 42, 138
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 244
LweI GCATC 1 cut(s) 31
MalI GATC 2 cut(s) 44, 140
MboI GATC 2 cut(s) 42, 138
MboII GAAGA 3 cut(s) 67, 100, 202
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 76
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 2 cut(s) 200, 202
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 3 cut(s) 7, 77, 268
Mox20I TGGCCA 1 cut(s) 76
MscI TGGCCA 1 cut(s) 76
Msp20I TGGCCA 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 3 cut(s) 152, 160, 173
MspR9I CCNGG 4 cut(s) 78, 153, 160, 243
Mva1269I GAATGC 1 cut(s) 8
MvaI CCWGG 2 cut(s) 78, 243
MwoI GCNNNNNNNGC 2 cut(s) 227, 236
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 2 cut(s) 153, 160
NdeII GATC 2 cut(s) 42, 138
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 3 cut(s) 140, 157, 240
PciSI GCTCTTC 1 cut(s) 50
PctI GAATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 163, 287
PleI GAGTC 2 cut(s) 200, 201
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 2 cut(s) 200, 201
Psp6I CCWGG 2 cut(s) 76, 241
PspGI CCWGG 2 cut(s) 76, 241
PspN4I GGNNCC 3 cut(s) 140, 157, 240
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 4 cut(s) 30, 94, 171, 186
RsaNI GTAC 4 cut(s) 29, 93, 170, 185
SapI GCTCTTC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 42, 138
SchI GAGTC 2 cut(s) 200, 202
ScrFI CCNGG 4 cut(s) 78, 153, 160, 243
SduI GDGCHC 1 cut(s) 62
SetI ASST 5 cut(s) 65, 82, 98, 112, 279
SfaNI GCATC 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 157
SsiI CCGC 1 cut(s) 130
SspDI GGCGCC 1 cut(s) 155
StyD4I CCNGG 4 cut(s) 76, 151, 158, 241
StyI CCWWGG 2 cut(s) 197, 269
TaqI TCGA 1 cut(s) 12
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 2 cut(s) 163, 287
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 202
XagI CCTNNNNNAGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.