RLG00000007080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012700
Physical Location & Seq
Reverse (-)
13377678 .. 13378266
589 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007080

Sequence Viewer

Length: 429 bp
ATGGCTAATGCCATAGATGACTTAGTTGTTGCTTTCACCCTCTTCGCTGCGTCTCGTGCCGGAGTAGGGTGCGCCAGTGGTGCTGCGAGGCAGGACGGTTTTTGCTTCTTGATGGGGAGTCGGGTTCTGCCTTTTCTTCTTCTGATGCTTGCTGTGCTCAGCCTCGGCAGAGATAGGACCGTTCCAGGCTTGGATCTGGTTTGGGTGATGGCGGCGTTGGAGAAGGTTTTGGTTCGTCTGCTGCACAATGGTGGGCAGCATTACTTGGCTTTGGTATGGTTGCTCGAGTTACAAATTTGGATAGTGCTGAAGGTGAGGACGACAGCGGCGCGCTGGGCTGTTGAAGACGGAGTTGGTACTAGCAGCATTGGCGGCGGAGATGGACGTGGTGGTGGGGGTTGGTGTGGTAGCATCGCTGCTTCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.87

Weight (kDa)

7.76

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 331
AciI CCGC 4 cut(s) 212, 326, 372, 375
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 344
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AleI CACNNNNGTG 1 cut(s) 249
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 1 cut(s) 284
ApeKI GCWGC 6 cut(s) 47, 83, 241, 256, 363, 416
ApoI RAATTY 1 cut(s) 294
AspLEI GCGC 3 cut(s) 74, 331, 333
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 3 cut(s) 28, 217, 325
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 177
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 6 cut(s) 34, 70, 228, 268, 375, 403
BccI CCATC 3 cut(s) 106, 202, 374
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 2 cut(s) 360, 427
BisI GCNGC 9 cut(s) 48, 84, 213, 242, 257, 327, 364, 373, 417
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 9 cut(s) 49, 85, 214, 243, 258, 328, 365, 374, 418
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 2 cut(s) 135, 420
BpiI GAAGAC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 75
BsePI GCGCGC 1 cut(s) 329
BseXI GCAGC 6 cut(s) 34, 70, 228, 268, 375, 403
BseYI CCCAGC 1 cut(s) 333
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 193
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 4 cut(s) 212, 326, 372, 375
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 331
BspPI GGATC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 163
BssHII GCGCGC 1 cut(s) 329
BssMI GATC 1 cut(s) 193
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 98, 181
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 150, 331
BstDEI CTNAG 2 cut(s) 22, 158
BstFNI CGCG 1 cut(s) 331
BstHHI GCGC 3 cut(s) 74, 331, 333
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 6 cut(s) 56, 80, 154, 335, 369, 372
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 6 cut(s) 34, 70, 228, 268, 375, 403
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 397
BtrI CACGTC 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 150, 331
CfoI GCGC 3 cut(s) 74, 331, 333
Cfr13I GGNCC 1 cut(s) 177
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 357
CviJI RGCY 5 cut(s) 5, 162, 189, 269, 338
CviKI_1 RGCY 5 cut(s) 5, 162, 189, 269, 338
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 22, 158
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 57
FaiI YATR 2 cut(s) 14, 277
Fnu4HI GCNGC 9 cut(s) 48, 84, 213, 242, 257, 327, 364, 373, 417
Fsp4HI GCNGC 9 cut(s) 48, 84, 213, 242, 257, 327, 364, 373, 417
FspBI CTAG 2 cut(s) 360, 427
GlaI GCGC 3 cut(s) 73, 330, 332
GluI GCNGC 9 cut(s) 48, 84, 213, 242, 257, 327, 364, 373, 417
GsaI CCCAGC 1 cut(s) 337
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 39
HhaI GCGC 3 cut(s) 74, 331, 333
Hin6I GCGC 3 cut(s) 72, 329, 331
HinP1I GCGC 3 cut(s) 72, 329, 331
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 60
HphI GGTGA 3 cut(s) 28, 217, 325
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 217, 304
HpyCH4III ACNGT 2 cut(s) 98, 181
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 80, 154, 335, 369, 372
HpyF3I CTNAG 2 cut(s) 22, 158
HpySE526I ACGT 1 cut(s) 385
HspAI GCGC 3 cut(s) 72, 329, 331
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 7 cut(s) 73, 77, 88, 171, 182, 198, 319
Lsp1109I GCAGC 6 cut(s) 34, 70, 228, 268, 375, 403
LweI GCATC 2 cut(s) 135, 420
MaeI CTAG 2 cut(s) 360, 427
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 288
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 5 cut(s) 34, 128, 131, 356, 414
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 50, 81, 173, 309
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 6 cut(s) 56, 80, 154, 335, 369, 372
NdeII GATC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 144
OliI CACNNNNGTG 1 cut(s) 249
PaeR7I CTCGAG 1 cut(s) 284
PauI GCGCGC 1 cut(s) 329
PkrI GCNGC 9 cut(s) 49, 85, 214, 243, 258, 328, 365, 374, 418
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 333
PspGI CCWGG 1 cut(s) 184
PspPI GGNCC 1 cut(s) 177
PspXI VCTCGAGB 1 cut(s) 284
PsuI RGATCY 1 cut(s) 193
PteI GCGCGC 1 cut(s) 329
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 9 cut(s) 48, 84, 213, 242, 257, 327, 364, 373, 417
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 159
SetI ASST 3 cut(s) 228, 315, 388
SfaNI GCATC 2 cut(s) 135, 420
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 294
SsiI CCGC 4 cut(s) 212, 326, 372, 375
SspMI CTAG 2 cut(s) 360, 427
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 98, 181
TaiI ACGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 285
TasI AATT 1 cut(s) 294
TauI GCSGC 3 cut(s) 215, 329, 375
TscAI CASTG 1 cut(s) 82
TseI GCWGC 6 cut(s) 47, 83, 241, 256, 363, 416
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 2 cut(s) 360, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.