Rh1CG015800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012700
Physical Location & Seq
Forward (+)
2544591 .. 2557916
13326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG015800.1

Sequence Viewer

Length: 414 bp
ATGTTTGCGGTGCTCAACCTCGGTAGAGATGGGATCGTTCCAGGCTTCGATCTAGATCGGGTATGTAGGGGTCTAGCTAGTGAGACGGGTGATACAGTATGGTTTGCTGCAGAGCAGTTGATAGGGTCGAGACTTCTAGATGTTTTGCTGGACGGTGAAGGTGGGGATTGCCAGAGATTTGTGGATCTCATGTTGGGTCCTCTTCCTACTGTGATAGATTTGGATAGTGCTGAAGGGGAGGACGACAGCGGCTGGGTTGTTGACGACGGAACGCCTGCCCGTAAGGCTCCGGGTGATATCAGGGGCTTTGGAGAACCAAGGGAGAAGAATACTTCATTGTCTTGTCAAACTGTTTGCAAAGAAAATTTTCTTGAAAAGAATCAATGGAATACCAAGACCCTTTTCTTTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.96

Weight (kDa)

4.29

Isoelectric Point (pI)

17.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 249
AclWI GGATC 2 cut(s) 41, 192
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 252
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 1 cut(s) 40
AjuI GAANNNNNNNTTGG 1 cut(s) 386
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 77, 124
AlwI GGATC 2 cut(s) 41, 192
AlwNI CAGNNNCTG 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 101, 167, 305
AvaII GGWCC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 42
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 77, 124
BfaI CTAG 4 cut(s) 53, 74, 78, 137
BfmI CTRYAG 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 2 cut(s) 108, 250
BlsI GCNGC 2 cut(s) 109, 251
Bme1390I CCNGG 2 cut(s) 42, 291
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 198, 288
BmrFI CCNGG 2 cut(s) 42, 291
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 19, 317
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 19, 317
BseJI GATNNNNATC 1 cut(s) 54
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 77, 124
BsmBI CGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 4 cut(s) 33, 49, 55, 184
BspACI CCGC 2 cut(s) 8, 249
BspLI GGNNCC 2 cut(s) 198, 288
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 2 cut(s) 41, 192
BssECI CCNNGG 2 cut(s) 19, 317
BssMI GATC 4 cut(s) 33, 49, 55, 184
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 4 cut(s) 97, 155, 211, 352
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 276
BstKTI GATC 4 cut(s) 36, 52, 58, 187
BstMAI GTCTC 2 cut(s) 77, 124
BstMBI GATC 4 cut(s) 33, 49, 55, 184
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 2 cut(s) 40, 289
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 1 cut(s) 190
CviJI RGCY 5 cut(s) 45, 77, 252, 287, 306
CviKI_1 RGCY 5 cut(s) 45, 77, 252, 287, 306
DpnI GATC 4 cut(s) 35, 51, 57, 186
DpnII GATC 4 cut(s) 33, 49, 55, 184
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 317
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 40
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 193
FaiI YATR 3 cut(s) 64, 100, 191
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 108, 250
Fsp4HI GCNGC 2 cut(s) 108, 250
FspBI CTAG 4 cut(s) 53, 74, 78, 137
GluI GCNGC 2 cut(s) 108, 250
GsaI CCCAGC 1 cut(s) 256
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 379
HpaII CCGG 1 cut(s) 290
HphI GGTGA 3 cut(s) 101, 167, 305
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 5 cut(s) 53, 129, 137, 371, 411
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 152, 227
HpyCH4III ACNGT 4 cut(s) 97, 155, 211, 352
HpyCH4V TGCA 2 cut(s) 110, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 4 cut(s) 33, 49, 55, 184
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 8 cut(s) 27, 54, 134, 185, 238, 286, 288, 303
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 4 cut(s) 53, 74, 78, 137
MalI GATC 4 cut(s) 35, 51, 57, 186
MboI GATC 4 cut(s) 33, 49, 55, 184
MboII GAAGA 2 cut(s) 194, 337
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 1 cut(s) 364
MnlI CCTC 3 cut(s) 29, 210, 232
MroXI GAANNNNTTC 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 42, 291
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 33, 49, 55, 184
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 198, 288
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 109, 251
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 198, 288
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PstI CTGCAG 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 184
SatI GCNGC 2 cut(s) 108, 250
Sau3AI GATC 4 cut(s) 33, 49, 55, 184
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 42, 291
SduI GDGCHC 1 cut(s) 15
SetI ASST 3 cut(s) 21, 79, 163
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 197
Sse9I AATT 1 cut(s) 364
SsiI CCGC 2 cut(s) 8, 249
SspMI CTAG 4 cut(s) 53, 74, 78, 137
StyD4I CCNGG 2 cut(s) 40, 289
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 4 cut(s) 97, 155, 211, 352
TaqI TCGA 2 cut(s) 48, 128
TasI AATT 1 cut(s) 364
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 1 cut(s) 379
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 364
XbaI TCTAGA 2 cut(s) 52, 136
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 4 cut(s) 53, 74, 78, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.