RLG00000032470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012700
Physical Location & Seq
Reverse (-)
15579284 .. 15579896
613 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032470

Sequence Viewer

Length: 522 bp
ATGGCTTATGCGATAGATGATTTCGCCATTCCTCTCGCTTTATCTATTGCATCTCATGCCGGTTTAGGATGCGTTTGTGGTGATGTGAGGCAAGATGACCTCCATTTCTTGGTGGATCGTCGTTTTCTACTTATTCTTTATCTGATGATTGTCGTGCTCAGCTTCGGCGAAGGTGGCACCAATCTGGGCTTGGATCTGGTTCTGGTATGGAGGAGTCAAACTGGTGAGCGAGGTGGTACAACCTATTTAGCTGCAGAGGAATCGATGGGGTTGAGACTTCTGGATGATTTGCTGGGTGGTGAGAGCAGTTCTCCTCGGGGATCGATGTTTCTCAAGCTCGGTTTTCTTTTGGAAGAGAGGGGTATTGGTGGTTGTGAAGACAGCTTCGTAGAGCCGAGATGGAGCGCCGGTAGCTTTGGCGCTGCAGCGGGTGGTGAGGTTGGCTGCAGGCATGGAGATGGCGTTGGTGCTGATGGTGGCAGCGAAGGCCGTGGGGCTTCATCTATGGGCTCATTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.02

Weight (kDa)

4.5

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 109
AciI CCGC 1 cut(s) 428
AclWI GGATC 3 cut(s) 123, 201, 328
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 109
AluBI AGCT 5 cut(s) 162, 251, 337, 384, 414
AluI AGCT 5 cut(s) 162, 251, 337, 384, 414
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 3 cut(s) 123, 201, 328
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 5 cut(s) 251, 422, 425, 444, 480
AspLEI GCGC 2 cut(s) 407, 422
AsuHPI GGTGA 4 cut(s) 92, 236, 311, 446
AvaI CYCGRG 1 cut(s) 315
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 512
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 238, 409, 431, 437, 492
BccI CCATC 4 cut(s) 259, 393, 452, 467
BceAI ACGGC 1 cut(s) 474
BcgI CGANNNNNNTGC 2 cut(s) 243, 277
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 1 cut(s) 520
BfmI CTRYAG 3 cut(s) 252, 423, 445
BfoI RGCGCY 2 cut(s) 408, 423
BisI GCNGC 5 cut(s) 252, 423, 426, 445, 481
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 5 cut(s) 253, 424, 427, 446, 482
BmeT110I CYCGRG 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 2 cut(s) 59, 59
BpiI GAAGAC 1 cut(s) 384
BplI GAGNNNNNCTC 2 cut(s) 295, 327
Bpu1102I GCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 317
Bsa29I ATCGAT 2 cut(s) 263, 323
BsaJI CCNNGG 2 cut(s) 314, 490
BsaXI ACNNNNNCTCC 4 cut(s) 394, 424, 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 2 cut(s) 59, 407
Bse1I ACTGG 1 cut(s) 226
BseCI ATCGAT 2 cut(s) 263, 323
BseDI CCNNGG 2 cut(s) 314, 490
BseGI GGATG 2 cut(s) 74, 289
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 226, 303
BseXI GCAGC 5 cut(s) 238, 409, 431, 437, 492
BseYI CCCAGC 1 cut(s) 292
BshFI GGCC 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 176
BshVI ATCGAT 2 cut(s) 263, 323
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 2 cut(s) 60, 408
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 159, 512
Bsp143I GATC 3 cut(s) 115, 193, 320
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 1 cut(s) 428
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 171
BspDI ATCGAT 2 cut(s) 263, 323
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 3 cut(s) 256, 427, 449
BspPI GGATC 3 cut(s) 123, 201, 328
BspT107I GGYRCC 1 cut(s) 176
BsrFI RCCGGY 2 cut(s) 59, 407
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 2 cut(s) 59, 407
BssECI CCNNGG 2 cut(s) 314, 490
BssMI GATC 3 cut(s) 115, 193, 320
Bst6I CTCTTC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 2 cut(s) 74, 289
BstH2I RGCGCY 2 cut(s) 408, 423
BstHHI GCGC 2 cut(s) 407, 422
BstKTI GATC 3 cut(s) 118, 196, 323
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 3 cut(s) 115, 193, 320
BstMWI GCNNNNNNNGC 4 cut(s) 56, 174, 411, 486
BstSFI CTRYAG 3 cut(s) 252, 423, 445
BstV1I GCAGC 5 cut(s) 238, 409, 431, 437, 492
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Bsu15I ATCGAT 2 cut(s) 263, 323
BsuRI GGCC 1 cut(s) 489
BsuTUI ATCGAT 2 cut(s) 263, 323
BtgI CCRYGG 1 cut(s) 490
BtsCI GGATG 2 cut(s) 74, 289
Cac8I GCNNGC 1 cut(s) 449
CfoI GCGC 2 cut(s) 407, 422
Cfr10I RCCGGY 2 cut(s) 59, 407
ClaI ATCGAT 2 cut(s) 263, 323
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 56, 452
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 117, 195, 322
DpnII GATC 3 cut(s) 115, 193, 320
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 2 cut(s) 59, 455
FaiI YATR 5 cut(s) 9, 57, 208, 453, 506
FatI CATG 2 cut(s) 55, 451
FauI CCCGC 1 cut(s) 421
Fnu4HI GCNGC 5 cut(s) 252, 423, 426, 445, 481
FokI GGATG 2 cut(s) 81, 296
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 5 cut(s) 252, 423, 426, 445, 481
FspBI CTAG 1 cut(s) 520
GlaI GCGC 2 cut(s) 406, 421
GluI GCNGC 5 cut(s) 252, 423, 426, 445, 481
GsaI CCCAGC 1 cut(s) 296
HaeII RGCGCY 2 cut(s) 408, 423
HaeIII GGCC 1 cut(s) 489
HapII CCGG 2 cut(s) 60, 408
HhaI GCGC 2 cut(s) 407, 422
Hin1II CATG 2 cut(s) 59, 455
Hin6I GCGC 2 cut(s) 405, 420
HinP1I GCGC 2 cut(s) 405, 420
HinfI GANTC 2 cut(s) 214, 260
HpaII CCGG 2 cut(s) 60, 408
HphI GGTGA 4 cut(s) 92, 236, 311, 446
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 2 cut(s) 164, 479
HpyCH4V TGCA 4 cut(s) 50, 254, 425, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 174, 411, 486
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 2 cut(s) 59, 455
HspAI GCGC 2 cut(s) 405, 420
Kzo9I GATC 3 cut(s) 115, 193, 320
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 9 cut(s) 73, 170, 182, 188, 207, 266, 278, 421, 433
Lsp1109I GCAGC 5 cut(s) 238, 409, 431, 437, 492
LweI GCATC 2 cut(s) 59, 59
MaeI CTAG 1 cut(s) 520
MalI GATC 3 cut(s) 117, 195, 322
MboI GATC 3 cut(s) 115, 193, 320
MboII GAAGA 2 cut(s) 365, 389
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 159, 512
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 9 cut(s) 42, 81, 110, 204, 224, 250, 324, 351, 430
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 2 cut(s) 60, 408
MwoI GCNNNNNNNGC 4 cut(s) 56, 174, 411, 486
NdeII GATC 3 cut(s) 115, 193, 320
NlaIII CATG 2 cut(s) 59, 455
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 420
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 5 cut(s) 253, 424, 427, 446, 482
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 178
PstI CTGCAG 3 cut(s) 256, 427, 449
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 456
SatI GCNGC 5 cut(s) 252, 423, 426, 445, 481
Sau3AI GATC 3 cut(s) 115, 193, 320
SchI GAGTC 1 cut(s) 223
SduI GDGCHC 2 cut(s) 159, 512
SfaNI GCATC 2 cut(s) 59, 59
SfcI CTRYAG 3 cut(s) 252, 423, 445
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SsiI CCGC 1 cut(s) 428
SspMI CTAG 1 cut(s) 520
TaqI TCGA 2 cut(s) 263, 323
TfiI GAWTC 1 cut(s) 260
TseI GCWGC 5 cut(s) 251, 422, 425, 444, 480
TspDTI ATGAA 1 cut(s) 489
Van91I CCANNNNNTGG 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.