Rh5CG188800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012700
Physical Location & Seq
Forward (+)
18818872 .. 18819136
265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG188800.1

Sequence Viewer

Length: 213 bp
ATGGCTAACGCCATAGATGACTTCGGTGTTGCTTTCGTCTTCTCCGCTGCGTCTCTTGCTGGAGTAAGGTGCACCGGTAGTGCTGCGAGGCAGGCCGATTTGCTCTTCTTGATGAGGCGTCAGGTTCTGTCTTTTCTTCTTATGATGTTTGCGGTGCTCAACCTCAGCGAAGATGGGATAGTTCCGGGCTTGGATCTAGATCGGAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.55

Weight (kDa)

4.92

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 152
AclWI GGATC 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 118
AgeI ACCGGT 1 cut(s) 74
Alw21I GWGCWC 2 cut(s) 74, 159
Alw26I GTCTC 1 cut(s) 57
Alw44I GTGCAC 1 cut(s) 70
AlwI GGATC 1 cut(s) 201
AlwNI CAGNNNCTG 1 cut(s) 127
AoxI GGCC 1 cut(s) 93
ApaLI GTGCAC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 47, 83
AsiGI ACCGGT 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 74, 159
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 34, 70
BccI CCATC 1 cut(s) 167
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 197
BisI GCNGC 2 cut(s) 48, 84
BlsI GCNGC 2 cut(s) 49, 85
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 118
BsaWI WCCGGW 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 198
BseMII CTCAG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 2 cut(s) 34, 70
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 74, 159
BsiSI CCGG 2 cut(s) 75, 185
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 74, 159
Bsp143I GATC 2 cut(s) 193, 199
BspACI CCGC 2 cut(s) 45, 152
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 177
BspPI GGATC 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 2 cut(s) 193, 199
BssNI GRCGYC 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 164
BstKTI GATC 2 cut(s) 196, 202
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 193, 199
BstMWI GCNNNNNNNGC 2 cut(s) 56, 92
BstSCI CCNGG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 34, 70
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 74
CseI GACGC 2 cut(s) 39, 107
CspAI ACCGGT 1 cut(s) 74
CviJI RGCY 3 cut(s) 5, 95, 189
CviKI_1 RGCY 3 cut(s) 5, 95, 189
DdeI CTNAG 1 cut(s) 164
DpnI GATC 2 cut(s) 195, 201
DpnII GATC 2 cut(s) 193, 199
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 57
FaiI YATR 2 cut(s) 14, 143
Fnu4HI GCNGC 2 cut(s) 48, 84
Fsp4HI GCNGC 2 cut(s) 48, 84
FspBI CTAG 1 cut(s) 197
GluI GCNGC 2 cut(s) 48, 84
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 75, 185
HgaI GACGC 2 cut(s) 39, 107
Hin1I GRCGYC 1 cut(s) 118
HpaII CCGG 2 cut(s) 75, 185
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 109, 197
Hpy8I GTNNAC 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 92
HpyF3I CTNAG 1 cut(s) 164
Hsp92I GRCGYC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 193, 199
LguI GCTCTTC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 45, 77, 88, 107, 198
Lsp1109I GCAGC 2 cut(s) 34, 70
MaeI CTAG 1 cut(s) 197
MalI GATC 2 cut(s) 195, 201
MboI GATC 2 cut(s) 193, 199
MboII GAAGA 4 cut(s) 31, 97, 128, 182
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 74, 159
MnlI CCTC 3 cut(s) 81, 108, 173
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 75, 185
MspR9I CCNGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 56, 92
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 193, 199
PciSI GCTCTTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 2 cut(s) 49, 85
PstNI CAGNNNCTG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 110
SatI GCNGC 2 cut(s) 48, 84
Sau3AI GATC 2 cut(s) 193, 199
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 2 cut(s) 74, 159
SetI ASST 3 cut(s) 71, 126, 165
SsiI CCGC 2 cut(s) 45, 152
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 184
TseI GCWGC 2 cut(s) 47, 83
VneI GTGCAC 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.