Rh3BG079000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012700
Physical Location & Seq
Forward (+)
6166955 .. 6168005
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG079000.1

Sequence Viewer

Length: 585 bp
ATGGTTAATGCCATAGATGACTTCGGTGTTGCTTTTGTCTTTTCCGCTGCGTCTCCTGCTGGTGTAGGGTGCGTCGGTGGTACTGCGAGGCAGGCCGGTTTTCGCTTCTTGATAAGGCGTCGAGTTCTACATTTTCTTCTTCTAATGTTTGCGGTGCTCAACCTCAGCGGAGATGAGATCGTTCCGGGCTTGGATCTAGATCTGGTATGTAGGGGTCCAGCGAGTGAGACAGGTGATACAGTATGGTTTGCTGCAGAGCAGTTGATAGGGTCGAGACATCTGGATGTTTTGCTGGACGGTGAGGGTGGGGATTGCCAGAGATTTGTGGATCTCAGGTTGGGTCTTCTTCCTATTGTGATAGGTGATGGTTGTGTTGGAGACGTTTTTGGTTTGTCTGTTGCGCAACGGTGGGCAACGTTACTTGGCTTTGGTATGGCTGCTCAGGTTACAGATTTGGATAATGCTGAAAGGGAGGACGACAGCGGCTGGGCTGTTGACGACAGAGTTGATACTGGCAGCATTGGCGGCAGAGATGGAGGTGACTTGCTAACCCTCATACCGACATGTTTTACTAATTTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.53

Weight (kDa)

4.25

Isoelectric Point (pI)

23.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 402
AciI CCGC 5 cut(s) 45, 152, 168, 483, 525
AclI AACGTT 1 cut(s) 416
AclWI GGATC 2 cut(s) 201, 336
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 563
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 4 cut(s) 57, 221, 268, 372
AlwI GGATC 2 cut(s) 201, 336
AlwNI CAGNNNCTG 1 cut(s) 486
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 4 cut(s) 47, 251, 437, 516
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 4 cut(s) 245, 311, 374, 551
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 4 cut(s) 34, 238, 424, 528
BccI CCATC 2 cut(s) 359, 527
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 4 cut(s) 57, 221, 268, 372
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 252
BglII AGATCT 1 cut(s) 199
BisI GCNGC 6 cut(s) 48, 252, 438, 484, 517, 526
BlsI GCNGC 6 cut(s) 49, 253, 439, 485, 518, 527
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 335
Bpu10I CCTNAGC 2 cut(s) 164, 441
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 198
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 198
BseMII CTCAG 3 cut(s) 178, 346, 455
BseNI ACTGG 1 cut(s) 517
BseXI GCAGC 4 cut(s) 34, 238, 424, 528
BseYI CCCAGC 1 cut(s) 486
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 96, 185
BsmAI GTCTC 4 cut(s) 57, 221, 268, 372
BsmBI CGTCTC 2 cut(s) 57, 372
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 4 cut(s) 177, 193, 199, 328
BspACI CCGC 5 cut(s) 45, 152, 168, 483, 525
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 3 cut(s) 177, 345, 454
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 2 cut(s) 201, 336
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 4 cut(s) 177, 193, 199, 328
BssNI GRCGYC 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 241, 299, 408
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 164, 332, 441
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 4 cut(s) 180, 196, 202, 331
BstMAI GTCTC 4 cut(s) 57, 221, 268, 372
BstMBI GATC 4 cut(s) 177, 193, 199, 328
BstMWI GCNNNNNNNGC 4 cut(s) 56, 92, 522, 525
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 4 cut(s) 34, 238, 424, 528
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 3 cut(s) 193, 199, 328
BstYI RGATCY 3 cut(s) 193, 199, 328
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 486
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 3 cut(s) 39, 61, 107
Csp6I GTAC 1 cut(s) 81
CviAII CATG 1 cut(s) 564
CviJI RGCY 6 cut(s) 95, 189, 426, 437, 486, 491
CviKI_1 RGCY 6 cut(s) 95, 189, 426, 437, 486, 491
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 3 cut(s) 164, 332, 441
DpnI GATC 4 cut(s) 179, 195, 201, 330
DpnII GATC 4 cut(s) 177, 193, 199, 328
Eco47I GGWCC 1 cut(s) 215
Esp3I CGTCTC 2 cut(s) 57, 372
FaeI CATG 1 cut(s) 567
FaiI YATR 6 cut(s) 14, 208, 244, 434, 557, 565
FatI CATG 1 cut(s) 563
Fnu4HI GCNGC 6 cut(s) 48, 252, 438, 484, 517, 526
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 6 cut(s) 48, 252, 438, 484, 517, 526
FspBI CTAG 1 cut(s) 197
FspI TGCGCA 1 cut(s) 402
GlaI GCGC 1 cut(s) 402
GluI GCNGC 6 cut(s) 48, 252, 438, 484, 517, 526
GsaI CCCAGC 1 cut(s) 490
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 96, 185
HgaI GACGC 3 cut(s) 39, 61, 107
HhaI GCGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 1 cut(s) 567
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HpaII CCGG 2 cut(s) 96, 185
HphI GGTGA 4 cut(s) 245, 311, 374, 551
Hpy166II GTNNAC 1 cut(s) 496
Hpy188III TCNNGA 4 cut(s) 109, 197, 273, 281
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 2 cut(s) 77, 123
HpyCH4III ACNGT 3 cut(s) 241, 299, 408
HpyCH4IV ACGT 2 cut(s) 381, 416
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 92, 522, 525
HpyF3I CTNAG 3 cut(s) 164, 332, 441
HpySE526I ACGT 2 cut(s) 381, 416
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 1 cut(s) 567
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 4 cut(s) 177, 193, 199, 328
Lsp1109I GCAGC 4 cut(s) 34, 238, 424, 528
MaeI CTAG 1 cut(s) 197
MaeII ACGT 2 cut(s) 381, 416
MaeIII GTNAC 3 cut(s) 417, 445, 539
MalI GATC 4 cut(s) 179, 195, 201, 330
MboI GATC 4 cut(s) 177, 193, 199, 328
MboII GAAGA 4 cut(s) 128, 131, 335, 338
MflI RGATCY 3 cut(s) 193, 199, 328
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 6 cut(s) 81, 173, 295, 466, 530, 563
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 3 cut(s) 47, 168, 483
MspI CCGG 2 cut(s) 96, 185
MspR9I CCNGG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 56, 92, 522, 525
NciI CCSGG 1 cut(s) 186
NdeII GATC 4 cut(s) 177, 193, 199, 328
NlaIII CATG 1 cut(s) 567
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 539
NsbI TGCGCA 1 cut(s) 402
NspI RCATGY 1 cut(s) 567
PciI ACATGT 1 cut(s) 563
PkrI GCNGC 6 cut(s) 49, 253, 439, 485, 518, 527
PscI ACATGT 1 cut(s) 563
Psp1406I AACGTT 1 cut(s) 416
PspFI CCCAGC 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 486
PsuI RGATCY 3 cut(s) 193, 199, 328
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 6 cut(s) 48, 252, 438, 484, 517, 526
Sau3AI GATC 4 cut(s) 177, 193, 199, 328
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 159
SetI ASST 8 cut(s) 165, 235, 338, 364, 384, 419, 447, 541
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 574
SsiI CCGC 5 cut(s) 45, 152, 168, 483, 525
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 241, 299, 408
TaiI ACGT 2 cut(s) 384, 419
TaqI TCGA 2 cut(s) 121, 272
TasI AATT 1 cut(s) 574
TauI GCSGC 2 cut(s) 486, 528
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 4 cut(s) 47, 251, 437, 516
Tsp45I GTSAC 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 196
XceI RCATGY 1 cut(s) 567
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.