RLG00000029092

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012700
Physical Location & Seq
Forward (+)
32764537 .. 32764938
402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029092

Sequence Viewer

Length: 321 bp
ATGGCTAACACCATAGATGACTTTATTGTTGCTTTCGTCCTCTTCGCTGTATCTCGTGCCGGAGTAGGGTATGTTGGAGGTGCTGCGAGAGATGGGACCGATCCGGGCTTGGATTTGGTTCAAACTTGTCTAGCGAGTAAGATGGGCGATACAGCCTGGTTTGCTGCAGAGAAGATGATGTGGTCCAGATTTCTGGATATTTTATTGGACGGTGGGGATGGTGCTTGTCGGAGATTTGTGAATCTCAGGCTAGTTCTTCTTCTTGATGTGTTGGCTGATGGCGGCGATGCAGACAATTTTAATTTGACTGCAGCACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.3

Weight (kDa)

4.35

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AclWI GGATC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 122
AjnI CCWGG 1 cut(s) 155
AlwI GGATC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 83, 164, 311
AspS9I GGNCC 2 cut(s) 96, 183
AsuC2I CCSGG 1 cut(s) 105
AvaII GGWCC 2 cut(s) 96, 183
BauI CACGAG 1 cut(s) 54
BbvI GCAGC 2 cut(s) 70, 151
BccI CCATC 4 cut(s) 86, 136, 212, 272
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 2 cut(s) 131, 251
BfmI CTRYAG 2 cut(s) 165, 309
BisI GCNGC 4 cut(s) 84, 165, 283, 312
BlsI GCNGC 4 cut(s) 85, 166, 284, 313
Bme1390I CCNGG 2 cut(s) 105, 157
Bme18I GGWCC 2 cut(s) 96, 183
BmgT120I GGNCC 2 cut(s) 96, 183
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 2 cut(s) 105, 157
BmsI GCATC 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 70, 151
BsiSI CCGG 2 cut(s) 60, 104
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 2 cut(s) 169, 313
BspPI GGATC 1 cut(s) 95
BssMI GATC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 103, 155
BstSFI CTRYAG 2 cut(s) 165, 309
BstV1I GCAGC 2 cut(s) 70, 151
BstXI CCANNNNNNTGG 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 96, 183
CviJI RGCY 5 cut(s) 5, 108, 155, 250, 275
CviKI_1 RGCY 5 cut(s) 5, 108, 155, 250, 275
DdeI CTNAG 1 cut(s) 245
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 96, 183
EcoRII CCWGG 1 cut(s) 155
FaiI YATR 2 cut(s) 14, 72
FaqI GGGAC 1 cut(s) 109
Fnu4HI GCNGC 4 cut(s) 84, 165, 283, 312
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 4 cut(s) 84, 165, 283, 312
FspBI CTAG 2 cut(s) 131, 251
GluI GCNGC 4 cut(s) 84, 165, 283, 312
HapII CCGG 2 cut(s) 60, 104
HinfI GANTC 1 cut(s) 241
HpaII CCGG 2 cut(s) 60, 104
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 3 cut(s) 186, 194, 263
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 3 cut(s) 167, 290, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 73, 117, 142, 169, 179, 199, 232
Lsp1109I GCAGC 2 cut(s) 70, 151
LweI GCATC 1 cut(s) 277
MaeI CTAG 2 cut(s) 131, 251
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 34, 184, 248, 251
MluCI AATT 2 cut(s) 295, 301
MmeI TCCRAC 2 cut(s) 55, 209
MnlI CCTC 2 cut(s) 50, 71
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 60, 104
MspR9I CCNGG 2 cut(s) 105, 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 105
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 4 cut(s) 85, 166, 284, 313
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 96, 183
PstI CTGCAG 2 cut(s) 169, 313
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 4 cut(s) 84, 165, 283, 312
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 2 cut(s) 96, 183
ScrFI CCNGG 2 cut(s) 105, 157
SetI ASST 1 cut(s) 82
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 2 cut(s) 165, 309
SinI GGWCC 2 cut(s) 96, 183
Sse9I AATT 2 cut(s) 295, 301
SsiI CCGC 1 cut(s) 282
SspMI CTAG 2 cut(s) 131, 251
StyD4I CCNGG 2 cut(s) 103, 155
TaaI ACNGT 1 cut(s) 212
TaqII GACCGA 1 cut(s) 113
TasI AATT 2 cut(s) 295, 301
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 3 cut(s) 83, 164, 311
VpaK11BI GGWCC 2 cut(s) 96, 183
XspI CTAG 2 cut(s) 131, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.