RLG00000035964

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012700
Physical Location & Seq
Reverse (-)
74211179 .. 74211779
601 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035964

Sequence Viewer

Length: 516 bp
ATGGCCGATGCCCTAGATGATTTCGCTACTCCTATCGCTTTCTCCGTTGTGTCTCATGCCGGGTTAGGATGCGTTGGTGGTGCTGTGAGGCAGGACAGCCTCCGTTTCTTGGTGGGTCGTCGTTTTCTGATTGTTCTTTATCTAATGATGGCCGTGCTTTGCTGCGGCGAAGGTGGAACCAATCTAGGCTTGGATCTGGATCAGAGATCGATGGTTCTCAGGCTGGGTTTTCTTCTGGCTGGGAGGGGTGTTGGCGGCTTTGAAGACGGCATCGTTGAGCCGAGATGGAGGGTAAGTAGTTTTCATGCGGCGGCGGGTGGTGAGGATGGCTGCAGGCATGGAGACTGGACTGGTACTGACGGTGGCCGCGAAGGCAGTGGGGGTGGTGACTGGTGCGACGACATGGCTGGCTCTCTCCCTACATGCAGAATTTTGCTTGGTTGGGCCTTTGGGGCCTTGAACTGGTTTGTGGGCTTTGTCTATGGGCTTATTGGGCTTGGGTTTCACACGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

17.99

Weight (kDa)

5.01

Isoelectric Point (pI)

27.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 369
AciI CCGC 6 cut(s) 165, 255, 308, 311, 314, 367
AclWI GGATC 2 cut(s) 201, 207
AcoI YGGCCR 3 cut(s) 3, 150, 364
AcsI RAATTY 1 cut(s) 429
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 109, 462
AgsI TTSAA 2 cut(s) 263, 460
Alw26I GTCTC 2 cut(s) 57, 336
AlwI GGATC 2 cut(s) 201, 207
AoxI GGCC 6 cut(s) 3, 150, 364, 444, 453, 510
ApeKI GCWGC 2 cut(s) 162, 330
ApoI RAATTY 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 444, 453
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 332, 398
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 149, 317
BccI CCATC 4 cut(s) 142, 205, 279, 320
BceAI ACGGC 2 cut(s) 137, 283
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 57, 336
BfaI CTAG 3 cut(s) 14, 185, 514
BfmI CTRYAG 1 cut(s) 331
BglI GCCNNNNNGGC 2 cut(s) 372, 452
BisI GCNGC 7 cut(s) 163, 166, 256, 309, 312, 331, 367
BlsI GCNGC 7 cut(s) 164, 167, 257, 310, 313, 332, 368
Bme1390I CCNGG 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 444, 453
BmiI GGNNCC 2 cut(s) 178, 454
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 2 cut(s) 59, 279
BpiI GAAGAC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 462
Bse1I ACTGG 4 cut(s) 350, 355, 395, 467
Bse8I GATNNNNATC 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 209
BseGI GGATG 2 cut(s) 74, 331
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 109, 462
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 4 cut(s) 350, 355, 395, 467
BseXI GCAGC 2 cut(s) 149, 317
BseYI CCCAGC 2 cut(s) 223, 239
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 6 cut(s) 5, 152, 366, 446, 455, 512
BshVI ATCGAT 1 cut(s) 209
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 109, 462
BsmAI GTCTC 2 cut(s) 57, 336
BsnI GGCC 6 cut(s) 5, 152, 366, 446, 455, 512
Bsp143I GATC 3 cut(s) 193, 199, 206
BspACI CCGC 6 cut(s) 165, 255, 308, 311, 314, 367
BspANI GGCC 6 cut(s) 5, 152, 366, 446, 455, 512
BspCNI CTCAG 1 cut(s) 231
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 178, 454
BspMAI CTGCAG 1 cut(s) 335
BspPI GGATC 2 cut(s) 201, 207
BsrI ACTGG 4 cut(s) 350, 355, 395, 467
BssMI GATC 3 cut(s) 193, 199, 206
Bst4CI ACNGT 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 335, 409
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 74, 331
BstFNI CGCG 1 cut(s) 369
BstKTI GATC 3 cut(s) 196, 202, 209
BstMAI GTCTC 2 cut(s) 57, 336
BstMBI GATC 3 cut(s) 193, 199, 206
BstMWI GCNNNNNNNGC 3 cut(s) 372, 452, 493
BstNSI RCATGY 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 331
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 149, 317
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Bsu15I ATCGAT 1 cut(s) 209
BsuRI GGCC 6 cut(s) 5, 152, 366, 446, 455, 512
BsuTUI ATCGAT 1 cut(s) 209
BtsCI GGATG 2 cut(s) 74, 331
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 335, 409
Cfr13I GGNCC 2 cut(s) 444, 453
ClaI ATCGAT 1 cut(s) 209
Csp6I GTAC 1 cut(s) 354
CviAII CATG 5 cut(s) 56, 305, 338, 403, 423
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 218
DpnI GATC 3 cut(s) 195, 201, 208
DpnII GATC 3 cut(s) 193, 199, 206
EaeI YGGCCR 3 cut(s) 3, 150, 364
EcoO109I RGGNCCY 1 cut(s) 453
FaeI CATG 5 cut(s) 59, 308, 341, 406, 426
FaiI YATR 6 cut(s) 57, 306, 339, 404, 424, 483
FatI CATG 5 cut(s) 55, 304, 337, 402, 422
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 7 cut(s) 163, 166, 256, 309, 312, 331, 367
FokI GGATG 2 cut(s) 81, 338
Fsp4HI GCNGC 7 cut(s) 163, 166, 256, 309, 312, 331, 367
FspBI CTAG 3 cut(s) 14, 185, 514
GluI GCNGC 7 cut(s) 163, 166, 256, 309, 312, 331, 367
GsaI CCCAGC 2 cut(s) 227, 243
HaeIII GGCC 6 cut(s) 5, 152, 366, 446, 455, 512
HapII CCGG 1 cut(s) 60
Hin1II CATG 5 cut(s) 59, 308, 341, 406, 426
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 332, 398
Hpy188I TCNGA 2 cut(s) 129, 204
Hpy188III TCNNGA 1 cut(s) 197
Hpy99I CGWCG 2 cut(s) 123, 401
HpyAV CCTTC 2 cut(s) 164, 365
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 2 cut(s) 333, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 452, 493
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 5 cut(s) 59, 308, 341, 406, 426
Kzo9I GATC 3 cut(s) 193, 199, 206
Lsp1109I GCAGC 2 cut(s) 149, 317
LweI GCATC 2 cut(s) 59, 279
MaeI CTAG 3 cut(s) 14, 185, 514
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 195, 201, 208
MboI GATC 3 cut(s) 193, 199, 206
MboII GAAGA 2 cut(s) 224, 275
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 429
MnlI CCTC 5 cut(s) 81, 110, 237, 282, 316
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 372, 452, 493
NciI CCSGG 1 cut(s) 61
NdeII GATC 3 cut(s) 193, 199, 206
NlaIII CATG 5 cut(s) 59, 308, 341, 406, 426
NlaIV GGNNCC 2 cut(s) 178, 454
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 426
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 366
PkrI GCNGC 7 cut(s) 164, 167, 257, 310, 313, 332, 368
PspFI CCCAGC 2 cut(s) 223, 239
PspN4I GGNNCC 2 cut(s) 178, 454
PspPI GGNCC 2 cut(s) 444, 453
PstI CTGCAG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SatI GCNGC 7 cut(s) 163, 166, 256, 309, 312, 331, 367
Sau3AI GATC 3 cut(s) 193, 199, 206
Sau96I GGNCC 2 cut(s) 444, 453
ScrFI CCNGG 1 cut(s) 61
SetI ASST 1 cut(s) 175
SfaNI GCATC 2 cut(s) 59, 279
SfcI CTRYAG 1 cut(s) 331
SfiI GGCCNNNNNGGCC 1 cut(s) 452
Sse9I AATT 1 cut(s) 429
SsiI CCGC 6 cut(s) 165, 255, 308, 311, 314, 367
SspMI CTAG 3 cut(s) 14, 185, 514
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 209
TasI AATT 1 cut(s) 429
TauI GCSGC 5 cut(s) 168, 258, 311, 314, 369
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 162, 330
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 34, 92
TspRI CASTG 1 cut(s) 382
XapI RAATTY 1 cut(s) 429
XceI RCATGY 1 cut(s) 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 3 cut(s) 14, 185, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.