Rh4BG296600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012700
Physical Location & Seq
Forward (+)
46811446 .. 46811937
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG296600.1

Sequence Viewer

Length: 492 bp
ATGGGGCGTCGGGTTCTGCCTTTTCTTCTTCTGATGCTTGATGTGCTCAGCCTCGAAGGAGATGGGACAGTTCCGGGCTTGGATCTAGTTTGGGTATGTAAGGGTCTAGTGAGTGATGAGACGCGCAATACAGCCTGGTTTGTTGCAGAGAAGTTGATGGGGTCGAGACTTCTGGATGTTTTGTTGGACGGTGAGGGTGGTGATTGCCGAAGATTTGTGGATCTCAGGTTGGTTCTTCTTCCTGATGTGATAGGTGATGGTGGCGTTGGAGACGATTTTGGTTTGCCTGCTGCGCAACGGTGGGCAGCATTACTTGGCTTTGGTATGGTTGCTCGAGTTACAAATTTGGATAGTGCTAGAGGTGAGGACGACAGCGGTTGGGCTGTTGAAGACGGAGTTGGTACTGGCAACATTGGCGGCGGAGATGGACGTGGTGGTGGGGTTGGTGTGGCGGCATCGCTGCTTCTTCCCCTCCTCCATCCAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

16.99

Weight (kDa)

4.44

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 294
AccII CGCG 1 cut(s) 124
AciI CCGC 4 cut(s) 375, 417, 420, 452
AclWI GGATC 2 cut(s) 90, 228
AcsI RAATTY 1 cut(s) 343
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 403
AgsI TTSAA 1 cut(s) 389
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 113, 160, 264
AlwI GGATC 2 cut(s) 90, 228
Ama87I CYCGRG 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 290, 305, 460
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 2 cut(s) 126, 295
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 4 cut(s) 203, 212, 266, 374
AvaI CYCGRG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 277, 317, 447
BccI CCATC 5 cut(s) 56, 151, 251, 419, 486
BciT130I CCWGG 1 cut(s) 136
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 113, 160, 264
BfaI CTAG 3 cut(s) 86, 107, 357
BisI GCNGC 5 cut(s) 291, 306, 418, 453, 461
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 5 cut(s) 292, 307, 419, 454, 462
Bme1390I CCNGG 2 cut(s) 75, 136
BmeT110I CYCGRG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 431
BmrFI CCNGG 2 cut(s) 75, 136
BmsI GCATC 2 cut(s) 24, 464
BpiI GAAGAC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 409
BseBI CCWGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 181, 478
BseMII CTCAG 2 cut(s) 61, 238
BseNI ACTGG 1 cut(s) 409
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 3 cut(s) 277, 317, 447
Bsh1236I CGCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 3 cut(s) 113, 160, 264
BsmBI CGTCTC 2 cut(s) 113, 264
BsmFI GGGAC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 82, 220
Bsp1720I GCTNAGC 1 cut(s) 47
BspACI CCGC 4 cut(s) 375, 417, 420, 452
BspCNI CTCAG 2 cut(s) 60, 237
BspFNI CGCG 1 cut(s) 124
BspPI GGATC 2 cut(s) 90, 228
BsrI ACTGG 1 cut(s) 409
BssMI GATC 2 cut(s) 82, 220
BssNI GRCGYC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 70, 191, 300
BstACI GRCGYC 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 47, 224
BstF5I GGATG 2 cut(s) 181, 478
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 2 cut(s) 126, 295
BstKTI GATC 2 cut(s) 85, 223
BstMAI GTCTC 3 cut(s) 113, 160, 264
BstMBI GATC 2 cut(s) 82, 220
BstMWI GCNNNNNNNGC 3 cut(s) 43, 292, 414
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 73, 134
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 277, 317, 447
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 82, 220
BstYI RGATCY 2 cut(s) 82, 220
BtgZI GCGATG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 2 cut(s) 181, 478
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 2 cut(s) 126, 295
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 402
CviJI RGCY 6 cut(s) 51, 78, 134, 318, 383, 487
CviKI_1 RGCY 6 cut(s) 51, 78, 134, 318, 383, 487
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 2 cut(s) 47, 224
DpnI GATC 2 cut(s) 84, 222
DpnII GATC 2 cut(s) 82, 220
EciI GGCGGA 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 134
Esp3I CGTCTC 2 cut(s) 113, 264
FaiI YATR 2 cut(s) 97, 326
FaqI GGGAC 1 cut(s) 79
Fnu4HI GCNGC 5 cut(s) 291, 306, 418, 453, 461
FokI GGATG 2 cut(s) 188, 465
Fsp4HI GCNGC 5 cut(s) 291, 306, 418, 453, 461
FspBI CTAG 3 cut(s) 86, 107, 357
FspI TGCGCA 1 cut(s) 294
GlaI GCGC 2 cut(s) 125, 294
GluI GCNGC 5 cut(s) 291, 306, 418, 453, 461
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 126, 295
Hin1I GRCGYC 1 cut(s) 7
Hin6I GCGC 2 cut(s) 124, 293
HinP1I GCGC 2 cut(s) 124, 293
HpaII CCGG 1 cut(s) 74
HphI GGTGA 4 cut(s) 203, 212, 266, 374
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 165, 173, 242
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 3 cut(s) 70, 191, 300
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 292, 414
HpyF3I CTNAG 2 cut(s) 47, 224
HpySE526I ACGT 1 cut(s) 430
Hsp92I GRCGYC 1 cut(s) 7
HspAI GCGC 2 cut(s) 124, 293
Kzo9I GATC 2 cut(s) 82, 220
LpnPI CCDG 8 cut(s) 87, 121, 148, 158, 211, 255, 300, 390
Lsp1109I GCAGC 3 cut(s) 277, 317, 447
LweI GCATC 2 cut(s) 24, 464
MaeI CTAG 3 cut(s) 86, 107, 357
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 337
MalI GATC 2 cut(s) 84, 222
MboI GATC 2 cut(s) 82, 220
MboII GAAGA 7 cut(s) 17, 20, 222, 227, 230, 401, 458
MflI RGATCY 2 cut(s) 82, 220
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 165, 247
MnlI CCTC 6 cut(s) 62, 187, 353, 358, 482, 485
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 75, 136
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 43, 292, 414
NciI CCSGG 1 cut(s) 75
NdeII GATC 2 cut(s) 82, 220
NsbI TGCGCA 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 333
PkrI GCNGC 5 cut(s) 292, 307, 419, 454, 462
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspXI VCTCGAGB 1 cut(s) 333
PsuI RGATCY 2 cut(s) 82, 220
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SatI GCNGC 5 cut(s) 291, 306, 418, 453, 461
Sau3AI GATC 2 cut(s) 82, 220
ScrFI CCNGG 2 cut(s) 75, 136
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 230, 256, 364, 433
SfaNI GCATC 2 cut(s) 24, 464
Sfr274I CTCGAG 1 cut(s) 333
SlaI CTCGAG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 1 cut(s) 343
SsiI CCGC 4 cut(s) 375, 417, 420, 452
SspMI CTAG 3 cut(s) 86, 107, 357
StyD4I CCNGG 2 cut(s) 73, 134
TaaI ACNGT 3 cut(s) 70, 191, 300
TaiI ACGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 54, 164, 334
TasI AATT 1 cut(s) 343
TauI GCSGC 2 cut(s) 420, 455
TseI GCWGC 3 cut(s) 290, 305, 460
TspGWI ACGGA 1 cut(s) 408
XapI RAATTY 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 333
XspI CTAG 3 cut(s) 86, 107, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.