Rroxscaffold_5G00370940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012700
Physical Location & Seq
Forward (+)
52601144 .. 52601557
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370940.1

Sequence Viewer

Length: 414 bp
ATGGCTAACGCCATAGATGACTTCGTTGTTGCTTTCGCCCTCTCTGTTGTGTCTCGTGCCGGAGTAGGGTGCGTCGGTGGTGCTACGAGGCAGGACGGTTTTCGCTTCTTGATGGGGCGTTGGGTTCTGCCTTTTCTTCTTCTGATGCTTGCTGTGCTCAGCCTCGACGGAGATGGGACAGTTTCGGGCTTGGATCTAGTTTGGGCATGTAGGGGTCTAGTGAGTAATGAGACGCGCGATACAGCCTGGTTTGTTGCAGAGAGGTTGATGGGGTCGAGACTGCTGGATGTTTTGCTGGACGGTGGGGGTCGTGATTGCCGAAGATTTGTGGATCTCAGGTTGGTTCTTCTTCCTGATGTGATAGGTGATGGCGGCGTTGGAGACGATTTTGGATGGTCTGCTGCCCAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.71

Weight (kDa)

4.63

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 235, 237
AciI CCGC 1 cut(s) 372
AclWI GGATC 2 cut(s) 201, 339
AfiI CCNNNNNNNGG 1 cut(s) 66
AjnI CCWGG 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 4 cut(s) 57, 224, 271, 375
AlwI GGATC 2 cut(s) 201, 339
ApeKI GCWGC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 377
BauI CACGAG 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 388
BccI CCATC 5 cut(s) 106, 167, 262, 362, 387
BciT130I CCWGG 1 cut(s) 247
BcoDI GTCTC 4 cut(s) 57, 224, 271, 375
BfaI CTAG 2 cut(s) 197, 218
BisI GCNGC 2 cut(s) 373, 402
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 2 cut(s) 374, 403
Bme1390I CCNGG 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 247
BseGI GGATG 2 cut(s) 292, 398
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 172, 349
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 2 cut(s) 235, 237
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 4 cut(s) 57, 224, 271, 375
BsmBI CGTCTC 2 cut(s) 224, 375
BsmFI GGGAC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 193, 331
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 171, 348
BspFNI CGCG 2 cut(s) 235, 237
BspPI GGATC 2 cut(s) 201, 339
BssMI GATC 2 cut(s) 193, 331
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 4 cut(s) 98, 181, 302, 411
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 158, 335
BstF5I GGATG 2 cut(s) 292, 398
BstFNI CGCG 2 cut(s) 235, 237
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 196, 334
BstMAI GTCTC 4 cut(s) 57, 224, 271, 375
BstMBI GATC 2 cut(s) 193, 331
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 245
BstUI CGCG 2 cut(s) 235, 237
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 2 cut(s) 193, 331
BstYI RGATCY 2 cut(s) 193, 331
BtsCI GGATG 2 cut(s) 292, 398
Cac8I GCNNGC 1 cut(s) 150
CfoI GCGC 1 cut(s) 237
CseI GACGC 2 cut(s) 61, 241
CviAII CATG 1 cut(s) 207
CviJI RGCY 4 cut(s) 5, 162, 189, 245
CviKI_1 RGCY 4 cut(s) 5, 162, 189, 245
DdeI CTNAG 2 cut(s) 158, 335
DpnI GATC 2 cut(s) 195, 333
DpnII GATC 2 cut(s) 193, 331
EcoRII CCWGG 1 cut(s) 245
Esp3I CGTCTC 2 cut(s) 224, 375
FaeI CATG 1 cut(s) 210
FaiI YATR 2 cut(s) 14, 208
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 373, 402
FokI GGATG 2 cut(s) 299, 405
Fsp4HI GCNGC 2 cut(s) 373, 402
FspBI CTAG 2 cut(s) 197, 218
GlaI GCGC 1 cut(s) 236
GluI GCNGC 2 cut(s) 373, 402
HapII CCGG 1 cut(s) 60
HgaI GACGC 2 cut(s) 61, 241
HhaI GCGC 1 cut(s) 237
Hin1II CATG 1 cut(s) 210
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 377
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 4 cut(s) 109, 276, 311, 353
Hpy99I CGWCG 2 cut(s) 77, 170
HpyCH4III ACNGT 4 cut(s) 98, 181, 302, 411
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 158, 335
Hsp92II CATG 1 cut(s) 210
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 193, 331
LpnPI CCDG 8 cut(s) 73, 77, 232, 259, 269, 281, 322, 366
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 197, 218
MalI GATC 2 cut(s) 195, 333
MboI GATC 2 cut(s) 193, 331
MboII GAAGA 5 cut(s) 128, 131, 333, 338, 341
MflI RGATCY 2 cut(s) 193, 331
MhlI GDGCHC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 4 cut(s) 50, 81, 173, 255
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MvnI CGCG 2 cut(s) 235, 237
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 2 cut(s) 193, 331
NlaIII CATG 1 cut(s) 210
NspI RCATGY 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PkrI GCNGC 2 cut(s) 374, 403
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PsuI RGATCY 2 cut(s) 193, 331
SatI GCNGC 2 cut(s) 373, 402
Sau3AI GATC 2 cut(s) 193, 331
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 159
SetI ASST 3 cut(s) 266, 341, 367
SfaNI GCATC 1 cut(s) 135
SsiI CCGC 1 cut(s) 372
SspMI CTAG 2 cut(s) 197, 218
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 4 cut(s) 98, 181, 302, 411
TaqI TCGA 2 cut(s) 165, 275
TauI GCSGC 1 cut(s) 375
TseI GCWGC 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 183
XceI RCATGY 1 cut(s) 210
XspI CTAG 2 cut(s) 197, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.