Rh5BG172700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012700
Physical Location & Seq
Forward (+)
18062998 .. 18063362
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG172700.1

Sequence Viewer

Length: 339 bp
ATGGCTAACGCCATAGACGACTTCGGTGTTGCTTTCGTCTTCTCCGCTGTGTCTCTTGCTGGAGTAGGGTGCGCCGGTGGTGCTGCGAGACAGGCCGGTTTGCTCTTCTTGATGAGGCGTCGGGTTCTGCCTTTTCTTCTTCTGATGTTTACGGTGCTCAACCTCGGCGGAGATGGGATCGTTCCGGGCTTGGATCTAGATCGGGTATGTAGGGGTCTAGCGAGTGAGACGGGTGATACAGTATGGTTTGCTACAGAGAAGTTGATAGGGTCGAGACTTCTGGATGTTTTCCTGGACGGTGGGGGTGGGGATTGCCGGAGATTTGTGGATCTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.85

Weight (kDa)

5.19

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 168
AclWI GGATC 3 cut(s) 185, 201, 336
AcyI GRCGYC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 291
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 4 cut(s) 57, 82, 221, 268
AlwI GGATC 3 cut(s) 185, 201, 336
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 4 cut(s) 57, 82, 221, 268
BfaI CTAG 2 cut(s) 197, 218
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 186, 293
BmrFI CCNGG 2 cut(s) 186, 293
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 163
Bse118I RCCGGY 2 cut(s) 74, 95
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 198
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 4 cut(s) 75, 96, 185, 316
BsmAI GTCTC 4 cut(s) 57, 82, 221, 268
BsmBI CGTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 4 cut(s) 177, 193, 199, 328
BspACI CCGC 2 cut(s) 45, 168
BspANI GGCC 1 cut(s) 95
BspPI GGATC 3 cut(s) 185, 201, 336
BspQI GCTCTTC 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 74, 95
BssAI RCCGGY 2 cut(s) 74, 95
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 4 cut(s) 177, 193, 199, 328
BssNI GRCGYC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 3 cut(s) 154, 241, 299
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 180, 196, 202, 331
BstMAI GTCTC 4 cut(s) 57, 82, 221, 268
BstMBI GATC 4 cut(s) 177, 193, 199, 328
BstMWI GCNNNNNNNGC 2 cut(s) 80, 92
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 184, 291
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 193, 328
BstYI RGATCY 2 cut(s) 193, 328
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 289
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 2 cut(s) 74, 95
CseI GACGC 1 cut(s) 107
CviJI RGCY 3 cut(s) 5, 95, 189
CviKI_1 RGCY 3 cut(s) 5, 95, 189
DdeI CTNAG 1 cut(s) 332
DpnI GATC 4 cut(s) 179, 195, 201, 330
DpnII GATC 4 cut(s) 177, 193, 199, 328
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 221
FaiI YATR 3 cut(s) 14, 208, 244
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 2 cut(s) 197, 218
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 95
HapII CCGG 4 cut(s) 75, 96, 185, 316
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 118
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HpaII CCGG 4 cut(s) 75, 96, 185, 316
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 4 cut(s) 109, 197, 273, 281
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 123
HpyCH4III ACNGT 3 cut(s) 154, 241, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 92
HpyF3I CTNAG 1 cut(s) 332
Hsp92I GRCGYC 1 cut(s) 118
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 4 cut(s) 177, 193, 199, 328
LguI GCTCTTC 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 2 cut(s) 197, 218
MalI GATC 4 cut(s) 179, 195, 201, 330
MboI GATC 4 cut(s) 177, 193, 199, 328
MboII GAAGA 4 cut(s) 31, 97, 128, 131
MflI RGATCY 2 cut(s) 193, 328
MhlI GDGCHC 1 cut(s) 159
MnlI CCTC 2 cut(s) 108, 173
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 4 cut(s) 75, 96, 185, 316
MspR9I CCNGG 2 cut(s) 186, 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 80, 92
NciI CCSGG 1 cut(s) 186
NdeII GATC 4 cut(s) 177, 193, 199, 328
NmeAIII GCCGAG 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PsuI RGATCY 2 cut(s) 193, 328
SapI GCTCTTC 1 cut(s) 110
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 4 cut(s) 177, 193, 199, 328
ScrFI CCNGG 2 cut(s) 186, 293
SduI GDGCHC 1 cut(s) 159
SetI ASST 2 cut(s) 165, 338
SfcI CTRYAG 1 cut(s) 252
SgrAI CRCCGGYG 1 cut(s) 74
SsiI CCGC 2 cut(s) 45, 168
SspMI CTAG 2 cut(s) 197, 218
StyD4I CCNGG 2 cut(s) 184, 291
TaaI ACNGT 3 cut(s) 154, 241, 299
TaqI TCGA 1 cut(s) 272
TseI GCWGC 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 2 cut(s) 197, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.