Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0012700

Physical Location & Seq

Genomic Coordinates Forward (+)

6166955 .. 6167552

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG078900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTAATGCCATAGATGACTTCGGTGTTGCTTTTGTCTTTTCCGCTGCGTCTCCTGCTGGTGTAGGGTGCGTCGGTGGTACTGCGAGGCAGGCCGGTTTTCGCTTCTTGATAAGGCGTCGAGTTCTACATTTTCTTCTTCTAATGTTTGCGGTGCTCAACCTCAGCGGAGATGAGATCGTTCCGGGCTTGGATCTAGATCTGGTATGTAGGGGTCCAGCGAGTGAGACAGGTGATACAGTATGGTTTGCTGCAGAGCAGTTGATAGGGTCGAGACATCTGGATGTTTTGCTGGACGGTGAGGGTGGGGATTGCCAGAGATTTGTGGATCTCAGGTTACAGATTTGGATAATGCTGAAAGGGAGGACGACAGCGGCTGGGCTGTTGACGACAGAGTTGATACTGGCAGCATTGGCGGCAGAGATGGAGGTGGTGGGAGTTGGTGTGGCGACATTGCTGCTTCTTCCCGTCCCCAATCCAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.18

Weight (kDa)

4.74

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012700)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003162 RLG00000007080 RLG00000029092 RLG00000032470 RLG00000035964
rosa_multiflora	Rmu_sc0002014.1_g000026
rosa_roxburghii	Rroxscaffold_5G00370940
rosa_samantha	Rh1AG018600 Rh1BG011400 Rh1CG015800 Rh2AG467000 Rh2CG453500 Rh2CG453800 Rh3BG079000 Rh3CG078900 Rh4BG296600 Rh5BG172700 Rh5CG188800 Rh5DG174300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	45, 152, 168, 374, 416
AclWI	GGATC	2 cut(s)	201, 336
AcsI	RAATTY	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	3 cut(s)	57, 221, 268
AlwI	GGATC	2 cut(s)	201, 336
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	4 cut(s)	47, 251, 407, 457
ApoI	RAATTY	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	245, 311
AvaII	GGWCC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	34, 238, 419, 444
BccI	CCATC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	57, 221, 268
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	252
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	6 cut(s)	48, 252, 375, 408, 417, 458
BlsI	GCNGC	6 cut(s)	49, 253, 376, 409, 418, 459
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	178, 346
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	4 cut(s)	34, 238, 419, 444
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	96, 185
BslFI	GGGAC	1 cut(s)	455
BsmAI	GTCTC	3 cut(s)	57, 221, 268
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	177, 193, 199, 328
BspACI	CCGC	5 cut(s)	45, 152, 168, 374, 416
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	177, 345
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	2 cut(s)	201, 336
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	4 cut(s)	177, 193, 199, 328
BssNI	GRCGYC	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	241, 299
BstACI	GRCGYC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	164, 332
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	180, 196, 202, 331
BstMAI	GTCTC	3 cut(s)	57, 221, 268
BstMBI	GATC	4 cut(s)	177, 193, 199, 328
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 92, 413, 416
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	34, 238, 419, 444
BstX2I	RGATCY	3 cut(s)	193, 199, 328
BstYI	RGATCY	3 cut(s)	193, 199, 328
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	3 cut(s)	39, 61, 107
Csp6I	GTAC	1 cut(s)	81
CviJI	RGCY	4 cut(s)	95, 189, 377, 382
CviKI_1	RGCY	4 cut(s)	95, 189, 377, 382
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	164, 332
DpnI	GATC	4 cut(s)	179, 195, 201, 330
DpnII	GATC	4 cut(s)	177, 193, 199, 328
Eco47I	GGWCC	1 cut(s)	215
Esp3I	CGTCTC	1 cut(s)	57
FaiI	YATR	3 cut(s)	14, 208, 244
FaqI	GGGAC	1 cut(s)	455
Fnu4HI	GCNGC	6 cut(s)	48, 252, 375, 408, 417, 458
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	6 cut(s)	48, 252, 375, 408, 417, 458
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	6 cut(s)	48, 252, 375, 408, 417, 458
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	96, 185
HgaI	GACGC	3 cut(s)	39, 61, 107
Hin1I	GRCGYC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HpaII	CCGG	2 cut(s)	96, 185
HphI	GGTGA	2 cut(s)	245, 311
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188III	TCNNGA	5 cut(s)	109, 197, 273, 281, 486
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	2 cut(s)	77, 123
HpyCH4III	ACNGT	2 cut(s)	241, 299
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 92, 413, 416
HpyF3I	CTNAG	2 cut(s)	164, 332
Hsp92I	GRCGYC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	177, 193, 199, 328
Lsp1109I	GCAGC	4 cut(s)	34, 238, 419, 444
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	4 cut(s)	179, 195, 201, 330
MboI	GATC	4 cut(s)	177, 193, 199, 328
MboII	GAAGA	3 cut(s)	128, 131, 455
MflI	RGATCY	3 cut(s)	193, 199, 328
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	481
MnlI	CCTC	5 cut(s)	81, 173, 295, 357, 421
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	3 cut(s)	47, 168, 374
MspI	CCGG	2 cut(s)	96, 185
MspR9I	CCNGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	56, 92, 413, 416
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	177, 193, 199, 328
NlaIV	GGNNCC	1 cut(s)	216
PkrI	GCNGC	6 cut(s)	49, 253, 376, 409, 418, 459
PspFI	CCCAGC	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	3 cut(s)	193, 199, 328
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	6 cut(s)	48, 252, 375, 408, 417, 458
Sau3AI	GATC	4 cut(s)	177, 193, 199, 328
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	165, 235, 338, 432
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	481
SsiI	CCGC	5 cut(s)	45, 152, 168, 374, 416
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	241, 299
TaqI	TCGA	2 cut(s)	121, 272
TasI	AATT	1 cut(s)	481
TauI	GCSGC	2 cut(s)	377, 419
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	4 cut(s)	47, 251, 407, 457
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	196
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.