Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Reverse (-)

2016330 .. 2016851

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTTCTCAGATCACATCAGCGGTGTTACTTGCGGCGTGTTTCGCGGTCCTTATCATGGTTTGTGCAGCTGTTGGAGAGGGCCAGCGGCCCGTACCTCGAAACATGCAAGGAGTGAGGCCGGCGGTACACGAAATAAAAGCCTTGAAAGGGTTGAAAGTCACAAAAGGCATGCGGCCAATACATAAAAACATGAAAGTCACAGAAGGCATGAAGCCAATACCAAAAGTCGTGACACAGATGGCGCCGAAGCTCGACATGCCCCCAATGCCTGGTACCAGCCCCGCGCTCGGCATGCGGCCAATACATAAAAACATGAAAGTCACAAAAGGCATAAGGCCAATACCAAAAGTCGTGGCAGAGATGGCGGCGCCGAAGCTCGACATGCCCCCAATGCCCGGTATGCCCCCAATGCCTGATATGGCCCCGACGCCGTCCCCCAACTCAAGCAGCTTCACATATCCGTCACTGGTGGTTGGGTTCCTTGCTCTCGTCGCTGTCTTCTGTCAGTTCTGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.44

Weight (kDa)

10.09

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	3 cut(s)	244, 275, 370
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccII	CGCG	2 cut(s)	47, 287
AciI	CCGC	9 cut(s)	23, 35, 47, 88, 125, 175, 285, 298, 368
AcoI	YGGCCR	2 cut(s)	176, 299
AcyI	GRCGYC	3 cut(s)	245, 371, 431
AfaI	GTAC	3 cut(s)	96, 129, 277
AfiI	CCNNNNNNNGG	5 cut(s)	58, 150, 272, 290, 398
AgsI	TTSAA	2 cut(s)	148, 157
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	4 cut(s)	71, 253, 379, 453
AluI	AGCT	4 cut(s)	71, 253, 379, 453
AoxI	GGCC	7 cut(s)	82, 89, 119, 176, 299, 338, 423
ApeKI	GCWGC	2 cut(s)	68, 450
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	3 cut(s)	247, 289, 373
AspS9I	GGNCC	4 cut(s)	49, 82, 90, 424
AsuC2I	CCSGG	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	3 cut(s)	244, 275, 370
BbsI	GAAGAC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	80, 462
BccI	CCATC	2 cut(s)	235, 358
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	399
BfaI	CTAG	1 cut(s)	520
BfoI	RGCGCY	2 cut(s)	248, 374
BisI	GCNGC	7 cut(s)	36, 69, 89, 176, 299, 369, 451
BlsI	GCNGC	7 cut(s)	37, 70, 90, 177, 300, 370, 452
Bme1390I	CCNGG	2 cut(s)	273, 399
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	4 cut(s)	49, 82, 90, 424
BmiI	GGNNCC	5 cut(s)	246, 277, 372, 426, 482
BmrFI	CCNGG	2 cut(s)	273, 399
BpiI	GAAGAC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	430
BpuMI	CCSGG	1 cut(s)	399
BsaHI	GRCGYC	3 cut(s)	245, 371, 431
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 150, 272, 290, 398
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	5 cut(s)	58, 150, 272, 290, 398
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	80, 462
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	2 cut(s)	47, 287
BshFI	GGCC	7 cut(s)	84, 91, 121, 178, 301, 340, 425
BshNI	GGYRCC	3 cut(s)	244, 275, 370
BsiSI	CCGG	2 cut(s)	122, 399
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	5 cut(s)	58, 150, 272, 290, 398
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	7 cut(s)	84, 91, 121, 178, 301, 340, 425
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	9 cut(s)	23, 35, 47, 88, 125, 175, 285, 298, 368
BspANI	GGCC	7 cut(s)	84, 91, 121, 178, 301, 340, 425
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	2 cut(s)	47, 287
BspLI	GGNNCC	5 cut(s)	246, 277, 372, 426, 482
BspT107I	GGYRCC	3 cut(s)	244, 275, 370
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	3 cut(s)	245, 371, 431
Bst2UI	CCWGG	1 cut(s)	273
BstACI	GRCGYC	3 cut(s)	245, 371, 431
BstC8I	GCNNGC	4 cut(s)	86, 123, 173, 296
BstDEI	CTNAG	1 cut(s)	9
BstFNI	CGCG	2 cut(s)	47, 287
BstH2I	RGCGCY	2 cut(s)	248, 374
BstHHI	GCGC	3 cut(s)	247, 289, 373
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	5 cut(s)	109, 175, 262, 298, 388
BstSCI	CCNGG	2 cut(s)	271, 397
BstUI	CGCG	2 cut(s)	47, 287
BstV1I	GCAGC	2 cut(s)	80, 462
BstV2I	GAAGAC	1 cut(s)	493
BsuRI	GGCC	7 cut(s)	84, 91, 121, 178, 301, 340, 425
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	4 cut(s)	86, 123, 173, 296
CfoI	GCGC	3 cut(s)	247, 289, 373
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	49, 82, 90, 424
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	95, 128, 276
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	9 cut(s)	58, 106, 172, 193, 211, 259, 295, 316, 385
CviQI	GTAC	3 cut(s)	95, 128, 276
DdeI	CTNAG	1 cut(s)	9
DinI	GGCGCC	2 cut(s)	246, 372
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	2 cut(s)	176, 299
Eco47I	GGWCC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	271
EgeI	GGCGCC	2 cut(s)	246, 372
EheI	GGCGCC	2 cut(s)	246, 372
FaeI	CATG	9 cut(s)	61, 109, 175, 196, 214, 262, 298, 319, 388
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	9 cut(s)	57, 105, 171, 192, 210, 258, 294, 315, 384
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	7 cut(s)	36, 69, 89, 176, 299, 369, 451
Fsp4HI	GCNGC	7 cut(s)	36, 69, 89, 176, 299, 369, 451
FspBI	CTAG	1 cut(s)	520
GlaI	GCGC	3 cut(s)	246, 288, 372
GluI	GCNGC	7 cut(s)	36, 69, 89, 176, 299, 369, 451
HaeII	RGCGCY	2 cut(s)	248, 374
HaeIII	GGCC	7 cut(s)	84, 91, 121, 178, 301, 340, 425
HapII	CCGG	2 cut(s)	122, 399
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	3 cut(s)	247, 289, 373
Hin1I	GRCGYC	3 cut(s)	245, 371, 431
Hin1II	CATG	9 cut(s)	61, 109, 175, 196, 214, 262, 298, 319, 388
Hin6I	GCGC	3 cut(s)	245, 287, 371
HinP1I	GCGC	3 cut(s)	245, 287, 371
HpaII	CCGG	2 cut(s)	122, 399
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	2 cut(s)	433, 497
HpyAV	CCTTC	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	68, 109
HpyF3I	CTNAG	1 cut(s)	9
Hsp92I	GRCGYC	3 cut(s)	245, 371, 431
Hsp92II	CATG	9 cut(s)	61, 109, 175, 196, 214, 262, 298, 319, 388
HspAI	GCGC	3 cut(s)	245, 287, 371
KasI	GGCGCC	2 cut(s)	244, 370
KpnI	GGTACC	1 cut(s)	279
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	8 cut(s)	98, 135, 258, 285, 292, 412, 429, 455
Lsp1109I	GCAGC	2 cut(s)	80, 462
MaeI	CTAG	1 cut(s)	520
MaeIII	GTNAC	6 cut(s)	27, 160, 199, 232, 322, 465
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	493
Mly113I	GGCGCC	2 cut(s)	245, 371
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	73, 108, 111
MroNI	GCCGGC	1 cut(s)	121
MspA1I	CMGCKG	3 cut(s)	23, 71, 88
MspI	CCGG	2 cut(s)	122, 399
MspR9I	CCNGG	2 cut(s)	273, 399
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	47, 287
NaeI	GCCGGC	1 cut(s)	123
NarI	GGCGCC	2 cut(s)	245, 371
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	12
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	9 cut(s)	61, 109, 175, 196, 214, 262, 298, 319, 388
NlaIV	GGNNCC	5 cut(s)	246, 277, 372, 426, 482
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	5 cut(s)	160, 199, 232, 322, 465
NspI	RCATGY	5 cut(s)	109, 175, 262, 298, 388
PaeI	GCATGC	2 cut(s)	175, 298
PdiI	GCCGGC	1 cut(s)	123
PflFI	GACNNNGTC	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	7 cut(s)	37, 70, 90, 177, 300, 370, 452
PluTI	GGCGCC	2 cut(s)	248, 374
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	5 cut(s)	246, 277, 372, 426, 482
PspPI	GGNCC	4 cut(s)	49, 82, 90, 424
PsyI	GACNNNGTC	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	3 cut(s)	96, 129, 277
RsaNI	GTAC	3 cut(s)	95, 128, 276
SatI	GCNGC	7 cut(s)	36, 69, 89, 176, 299, 369, 451
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	4 cut(s)	49, 82, 90, 424
ScrFI	CCNGG	2 cut(s)	273, 399
SetI	ASST	5 cut(s)	73, 100, 255, 381, 455
SfoI	GGCGCC	2 cut(s)	246, 372
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
SphI	GCATGC	2 cut(s)	175, 298
SsiI	CCGC	9 cut(s)	23, 35, 47, 88, 125, 175, 285, 298, 368
SspDI	GGCGCC	2 cut(s)	244, 370
SspMI	CTAG	1 cut(s)	520
StyD4I	CCNGG	2 cut(s)	271, 397
TaqI	TCGA	3 cut(s)	100, 255, 381
TauI	GCSGC	5 cut(s)	38, 91, 178, 301, 371
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	5 cut(s)	160, 199, 232, 322, 465
TseI	GCWGC	2 cut(s)	68, 450
Tsp45I	GTSAC	5 cut(s)	160, 199, 232, 322, 465
TspDTI	ATGAA	3 cut(s)	209, 227, 332
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	474
Tth111I	GACNNNGTC	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	5 cut(s)	109, 175, 262, 298, 388
XspI	CTAG	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.