Rh1CG282800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010560
Physical Location & Seq
Forward (+)
55449577 .. 55449783
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG282800.1

Sequence Viewer

Length: 207 bp
ATGGAGGCCGGTGAGGTGGACACGGGGATGCTGCTATTGGTGCGTGGGGCTGGGCGTGTAGGCTGCGGGGAGGGTCGTACGTGCTGGGCTAGGCAATGTTGTCTGGTGCTGCAGGGATCGCCGGATCTGTGCTGTGATGGGCTGCTGGGCGCAGGTCCGCAGGGAGGTCTGCGTGGGCTGTGGGACGCGCGCTGGAGCATCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.08

Weight (kDa)

5.04

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
AccII CGCG 2 cut(s) 188, 190
AciI CCGC 2 cut(s) 66, 158
AclWI GGATC 2 cut(s) 124, 132
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 164
AlwI GGATC 2 cut(s) 124, 132
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 4 cut(s) 31, 63, 109, 142
AspLEI GCGC 3 cut(s) 152, 190, 192
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 155
BbvI GCAGC 4 cut(s) 18, 50, 96, 129
BccI CCATC 1 cut(s) 131
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 4 cut(s) 32, 64, 110, 143
BlsI GCNGC 4 cut(s) 33, 65, 111, 144
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmsI GCATC 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 101
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 101
BsePI GCGCGC 1 cut(s) 188
BseXI GCAGC 4 cut(s) 18, 50, 96, 129
BseYI CCCAGC 3 cut(s) 50, 84, 145
Bsh1236I CGCG 2 cut(s) 188, 190
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 9, 122
BsiWI CGTACG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 116, 124
BspACI CCGC 2 cut(s) 66, 158
BspANI GGCC 1 cut(s) 8
BspFNI CGCG 2 cut(s) 188, 190
BspMAI CTGCAG 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 2 cut(s) 124, 132
BsrDI GCAATG 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 2 cut(s) 116, 124
BstBAI YACGTR 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 2 cut(s) 188, 190
BstHHI GCGC 3 cut(s) 152, 190, 192
BstKTI GATC 2 cut(s) 119, 127
BstMBI GATC 2 cut(s) 116, 124
BstMWI GCNNNNNNNGC 2 cut(s) 40, 118
BstSFI CTRYAG 1 cut(s) 110
BstUI CGCG 2 cut(s) 188, 190
BstV1I GCAGC 4 cut(s) 18, 50, 96, 129
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 3 cut(s) 152, 190, 192
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 78
CviJI RGCY 6 cut(s) 8, 50, 63, 89, 142, 178
CviKI_1 RGCY 6 cut(s) 8, 50, 63, 89, 142, 178
CviQI GTAC 1 cut(s) 78
DpnI GATC 2 cut(s) 118, 126
DpnII GATC 2 cut(s) 116, 124
Eco47I GGWCC 1 cut(s) 155
FaiI YATR 1 cut(s) 205
FaqI GGGAC 1 cut(s) 197
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 4 cut(s) 32, 64, 110, 143
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 32, 64, 110, 143
FspBI CTAG 1 cut(s) 90
GlaI GCGC 3 cut(s) 151, 189, 191
GluI GCNGC 4 cut(s) 32, 64, 110, 143
GsaI CCCAGC 3 cut(s) 54, 88, 149
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 9, 122
HgaI GACGC 1 cut(s) 194
HhaI GCGC 3 cut(s) 152, 190, 192
Hin6I GCGC 3 cut(s) 150, 188, 190
HinP1I GCGC 3 cut(s) 150, 188, 190
HpaII CCGG 2 cut(s) 9, 122
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 118
HpySE526I ACGT 1 cut(s) 80
HspAI GCGC 3 cut(s) 150, 188, 190
Kzo9I GATC 2 cut(s) 116, 124
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 4 cut(s) 18, 50, 96, 129
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 80
MalI GATC 2 cut(s) 118, 126
MboI GATC 2 cut(s) 116, 124
MflI RGATCY 1 cut(s) 124
MnlI CCTC 3 cut(s) 7, 64, 158
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 2 cut(s) 9, 122
MvnI CGCG 2 cut(s) 188, 190
MwoI GCNNNNNNNGC 2 cut(s) 40, 118
NdeII GATC 2 cut(s) 116, 124
PauI GCGCGC 1 cut(s) 188
Pfl23II CGTACG 1 cut(s) 77
PkrI GCNGC 4 cut(s) 33, 65, 111, 144
Ppu21I YACGTR 1 cut(s) 81
PspFI CCCAGC 3 cut(s) 50, 84, 145
PspLI CGTACG 1 cut(s) 77
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 114
PsuI RGATCY 1 cut(s) 124
PteI GCGCGC 1 cut(s) 188
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 4 cut(s) 32, 64, 110, 143
Sau3AI GATC 2 cut(s) 116, 124
Sau96I GGNCC 1 cut(s) 155
SetI ASST 4 cut(s) 18, 83, 157, 169
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 26
SsiI CCGC 2 cut(s) 66, 158
SspMI CTAG 1 cut(s) 90
TaiI ACGT 1 cut(s) 83
TseI GCWGC 4 cut(s) 31, 63, 109, 142
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.