Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Reverse (-)

34538287 .. 34546585

Gene Structure 8299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024320

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGGCTTGGATATCAGTTTATCCCAAACCGAACCAGCAAAGGGAGTGCCTCATGCATCTTGAAGCAGATAGGTGGTGGACTTATTAGTTTCTTCTGGGGTGAGAGAGTTTCGGTGACTGCAACATTGAACGACGACAGTTTTCTCTCTCAGGCCTTTGGCTGGGTCACGACAGGGGTGGAGGATCCTGGTTATGGATCTGATGGGTGTGAGCGGCTAGGATGGTTTCACTATGAGGTGGAAGGGGAGAAAGCTGGAGAGTCAAAGGTTGGTGGTGTTTTGGTCCTAGATCTGGTTGGAGACTATGTAGAGAGTGGAGGTGGAAGGCCACACGGCGGGCTTGGGTGGCTACGATGGGGTGAGATTGTGAGGCTGGGCTTAAGGCGGTGGTTTGCTGGTGGTTGGGGTCTGATGTTGAGGAAATTGGAAGCGTGTTGCGGTGGCCAAATTCTCTTTTCTATTAGAGGAACTGAACACAAACAATATAACAGAAAAGGAAAGCTCAGAGCCTTAGAGGAAGGATTGGATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

6.83

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	4 cut(s)	214, 336, 385, 438
AclWI	GGATC	3 cut(s)	179, 192, 205
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	447
AfiI	CCNNNNNNNGG	5 cut(s)	42, 162, 194, 292, 335
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	64, 130
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	254, 502
AluI	AGCT	2 cut(s)	254, 502
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	3 cut(s)	179, 192, 205
AoxI	GGCC	3 cut(s)	153, 326, 442
ApoI	RAATTY	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	113, 127, 371
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	444
BamHI	GGATCC	1 cut(s)	184
BccI	CCATC	3 cut(s)	197, 216, 348
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	218, 287
BfrI	CTTAAG	1 cut(s)	379
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 162, 194, 292, 335
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	5 cut(s)	42, 162, 194, 292, 335
BseMII	CTCAG	2 cut(s)	164, 517
BseYI	CCCAGC	2 cut(s)	162, 373
BshFI	GGCC	3 cut(s)	155, 328, 444
BslI	CCNNNNNNNGG	5 cut(s)	42, 162, 194, 292, 335
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	155, 328, 444
Bsp143I	GATC	3 cut(s)	184, 197, 289
BspACI	CCGC	4 cut(s)	214, 336, 385, 438
BspANI	GGCC	3 cut(s)	155, 328, 444
BspCNI	CTCAG	2 cut(s)	163, 516
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	3 cut(s)	179, 192, 205
BspTI	CTTAAG	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	214
BssMI	GATC	3 cut(s)	184, 197, 289
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	150, 503, 511
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	3 cut(s)	187, 200, 292
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	184, 197, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstX2I	RGATCY	3 cut(s)	184, 197, 289
BstYI	RGATCY	3 cut(s)	184, 197, 289
BsuRI	GGCC	3 cut(s)	155, 328, 444
BtsCI	GGATG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	1 cut(s)	54
DdeI	CTNAG	3 cut(s)	150, 503, 511
DpnI	GATC	3 cut(s)	186, 199, 291
DpnII	GATC	3 cut(s)	184, 197, 289
EaeI	YGGCCR	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	155
Eco32I	GATATC	2 cut(s)	14, 529
Eco47I	GGWCC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	2 cut(s)	14, 529
EcoT22I	ATGCAT	1 cut(s)	59
FaeI	CATG	1 cut(s)	57
FaiI	YATR	5 cut(s)	55, 195, 234, 306, 486
FatI	CATG	1 cut(s)	53
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	218, 287
GluI	GCNGC	1 cut(s)	215
GsaI	CCCAGC	2 cut(s)	166, 377
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	155, 328, 444
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	3 cut(s)	113, 127, 371
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	4 cut(s)	202, 411, 506, 533
Hpy188III	TCNNGA	2 cut(s)	61, 169
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	236, 318, 512
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	57, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	3 cut(s)	150, 503, 511
Hsp92II	CATG	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	184, 197, 289
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	2 cut(s)	218, 287
MaeIII	GTNAC	2 cut(s)	115, 166
MalI	GATC	3 cut(s)	186, 199, 291
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	3 cut(s)	184, 197, 289
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	3 cut(s)	184, 197, 289
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	2 cut(s)	422, 447
MluNI	TGGCCA	1 cut(s)	444
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	8 cut(s)	61, 175, 229, 311, 363, 411, 458, 508
Mox20I	TGGCCA	1 cut(s)	444
Mph1103I	ATGCAT	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	444
MseI	TTAA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	444
MspCI	CTTAAG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	3 cut(s)	184, 197, 289
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	115, 166
NsiI	ATGCAT	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	2 cut(s)	162, 373
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	184, 197, 289
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	184, 197, 289
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	6 cut(s)	76, 240, 256, 270, 322, 504
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	2 cut(s)	422, 447
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	4 cut(s)	214, 336, 385, 438
SspMI	CTAG	2 cut(s)	218, 287
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	2 cut(s)	422, 447
TauI	GCSGC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TseFI	GTSAC	2 cut(s)	115, 166
Tsp45I	GTSAC	2 cut(s)	115, 166
Vha464I	CTTAAG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	447
XspI	CTAG	2 cut(s)	218, 287
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.