Rmu_sc0017177.1_g000001

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017177.1
Physical Location & Seq
Forward (+)
1 .. 4066
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017177.1_g000001.1.cds

Sequence Viewer

Length: 1151 bp
gaggaaaacctagggttggaaaacagagttttgttgttgtggcttgtctgacggcgtccccacgtcgatggcggcttctggctgcgtcggcatgtggtggacgttgctggacaggggtggaggatcctggttatggatctgatgggtgtgagaggctgggatggtttcactctgaggtggaagaggataggaaggtggagagtcaaagggtggtggtggtcaacaaatccaggcctatggtggcggtgcagattgctccctctttcatgatagtggaggtggaaggccacatggcgggcttgggtggctgcaatggggtgaaaatagtacaacgtaaggttggtggctgggttgtatcgatacatgcttggtggttactcattgtagctcgcgggtatgagcgtaaaatttggttaggggttgagcatttttggctcatggaagtcactcatgttgacggtcccagtaggtcgacggcaatgtggcagagcttggctagctcttcctctttggaggaagggagggagcggggggtggtgatgttggagagattggaacttggaggctggatgctgcggtgcttggcccggtgggctgggatcgagtgggaaggccgccggatcgagatggaggccggtgaggtggacacggggatgctgctattggtgcgtgcggctgggcgtgcaggctggggggagggtcgtacgtgctgggctaggcactgtggtctggtgctgcagggatcgccggatcggtgctgtgatgggctgctgggtgcgggtctgcagggagtggctggggatgatgaggaagtcacagaaacgaaaataagagccttcctagatgaaaaggcattagatctgaagaagctgcagacaccgttatttgaagaattctttagtactttgaatgcagctggtccccaaggtgcaattggaaatgcaaattgtgatcgtgtttcaaataatctgcatttacctcctaaaagcaagtcacccaggaccggtcgccggattccggtcaccggtcgccgaattcctgtcaccggagtccgaggccggccactagtcaccggagtctggtcaccggagtcgccggccggccactggtcaccaaagtccggcaaggtggaggatgatttctccctctaa

Protein Analysis

382

Amino Acids

41.86

Weight (kDa)

8.64

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 528
AccI GTMKAC 1 cut(s) 472
AccII CGCG 1 cut(s) 392
AciI CCGC 9 cut(s) 72, 244, 295, 392, 528, 576, 615, 673, 778
AclWI GGATC 7 cut(s) 118, 131, 144, 607, 628, 750, 758
AcoI YGGCCR 3 cut(s) 1060, 1097, 1101
AcsI RAATTY 3 cut(s) 407, 892, 1034
AcuI CTGAAG 1 cut(s) 883
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 3 cut(s) 329, 705, 903
AgeI ACCGGT 2 cut(s) 1003, 1024
AgsI TTSAA 3 cut(s) 889, 909, 962
AhlI ACTAGT 1 cut(s) 1065
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 3 cut(s) 126, 229, 997
AluBI AGCT 5 cut(s) 388, 491, 500, 870, 916
AluI AGCT 5 cut(s) 388, 491, 500, 870, 916
AlwI GGATC 7 cut(s) 118, 131, 144, 607, 628, 750, 758
AoxI GGCC 9 cut(s) 232, 285, 584, 612, 632, 1056, 1060, 1097, 1101
ApeKI GCWGC 8 cut(s) 82, 308, 573, 657, 735, 768, 870, 913
ApoI RAATTY 3 cut(s) 407, 892, 1034
AsiGI ACCGGT 2 cut(s) 1003, 1024
AspA2I CCTAGG 1 cut(s) 10
AspS9I GGNCC 4 cut(s) 460, 585, 919, 1001
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 9 cut(s) 330, 549, 649, 986, 1014, 1035, 1062, 1076, 1103
AsuNHI GCTAGC 1 cut(s) 496
AvaII GGWCC 3 cut(s) 460, 919, 1001
AvrII CCTAGG 1 cut(s) 10
BamHI GGATCC 1 cut(s) 123
BbvI GCAGC 8 cut(s) 69, 295, 560, 644, 722, 755, 857, 925
BccI CCATC 5 cut(s) 62, 136, 155, 621, 757
BceAI ACGGC 2 cut(s) 68, 491
BciT130I CCWGG 3 cut(s) 128, 231, 999
BcnI CCSGG 1 cut(s) 588
BcuI ACTAGT 1 cut(s) 1065
BfaI CTAG 5 cut(s) 11, 497, 716, 841, 1066
BfmI CTRYAG 3 cut(s) 736, 784, 871
BglI GCCNNNNNGGC 1 cut(s) 592
BglII AGATCT 1 cut(s) 858
BlnI CCTAGG 1 cut(s) 10
BmcAI AGTACT 1 cut(s) 903
Bme1390I CCNGG 4 cut(s) 128, 231, 588, 999
Bme18I GGWCC 3 cut(s) 460, 919, 1001
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 460, 585, 919, 1001
BmiI GGNNCC 3 cut(s) 125, 462, 921
BmrFI CCNGG 4 cut(s) 128, 231, 588, 999
BmrI ACTGGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 560, 644
BmtI GCTAGC 1 cut(s) 500
BmuI ACTGGG 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 588
Bsa29I ATCGAT 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 707
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 4 cut(s) 10, 924, 997, 1053
BsaWI WCCGGW 6 cut(s) 1003, 1017, 1024, 1045, 1072, 1086
Bse118I RCCGGY 6 cut(s) 634, 1003, 1024, 1058, 1095, 1099
Bse1I ACTGG 2 cut(s) 464, 1111
Bse3DI GCAATG 2 cut(s) 318, 485
BseBI CCWGG 3 cut(s) 128, 231, 999
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 4 cut(s) 10, 924, 997, 1053
BseGI GGATG 5 cut(s) 166, 575, 659, 807, 1140
BseMI GCAATG 2 cut(s) 318, 485
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 464, 1111
BseX3I CGGCCG 1 cut(s) 1097
BseXI GCAGC 8 cut(s) 69, 295, 560, 644, 722, 755, 857, 925
BseYI CCCAGC 8 cut(s) 156, 347, 595, 676, 689, 710, 771, 796
BsgI GTGCAG 2 cut(s) 268, 704
Bsh1236I CGCG 1 cut(s) 392
Bsh1285I CGRYCG 3 cut(s) 1008, 1029, 1100
BshFI GGCC 9 cut(s) 234, 287, 586, 614, 634, 1058, 1062, 1099, 1103
BshTI ACCGGT 2 cut(s) 1003, 1024
BshVI ATCGAT 1 cut(s) 358
BsiEI CGRYCG 3 cut(s) 1008, 1029, 1100
BsiWI CGTACG 1 cut(s) 703
BslFI GGGAC 3 cut(s) 42, 446, 905
BsmFI GGGAC 3 cut(s) 42, 446, 905
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 9 cut(s) 234, 287, 586, 614, 634, 1058, 1062, 1099, 1103
Bsp143I GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
BspACI CCGC 9 cut(s) 72, 244, 295, 392, 528, 576, 615, 673, 778
BspANI GGCC 9 cut(s) 234, 287, 586, 614, 634, 1058, 1062, 1099, 1103
BspCNI CTCAG 1 cut(s) 165
BspDI ATCGAT 1 cut(s) 358
BspFNI CGCG 1 cut(s) 392
BspHI TCATGA 1 cut(s) 266
BspLI GGNNCC 3 cut(s) 125, 462, 921
BspMAI CTGCAG 3 cut(s) 740, 788, 875
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 7 cut(s) 118, 131, 144, 607, 628, 750, 758
BspQI GCTCTTC 1 cut(s) 507
BsrBI CCGCTC 1 cut(s) 528
BsrDI GCAATG 2 cut(s) 318, 485
BsrFI RCCGGY 6 cut(s) 634, 1003, 1024, 1058, 1095, 1099
BsrI ACTGG 2 cut(s) 464, 1111
BssAI RCCGGY 6 cut(s) 634, 1003, 1024, 1058, 1095, 1099
BssECI CCNNGG 4 cut(s) 10, 924, 997, 1053
BssMI GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 2 cut(s) 10, 924
Bst2UI CCWGG 3 cut(s) 128, 231, 999
Bst4CI ACNGT 3 cut(s) 460, 724, 881
Bst6I CTCTTC 2 cut(s) 176, 507
BstACI GRCGYC 1 cut(s) 55
BstBAI YACGTR 1 cut(s) 707
BstC8I GCNNGC 9 cut(s) 297, 390, 498, 671, 683, 687, 1060, 1097, 1101
BstDEI CTNAG 1 cut(s) 173
BstEII GGTNACC 3 cut(s) 1020, 1082, 1109
BstF5I GGATG 5 cut(s) 166, 575, 659, 807, 1140
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 8 cut(s) 126, 139, 602, 623, 745, 753, 861, 954
BstMBI GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
BstMCI CGRYCG 3 cut(s) 1008, 1029, 1100
BstMWI GCNNNNNNNGC 8 cut(s) 88, 305, 432, 497, 592, 666, 682, 744
BstNI CCWGG 3 cut(s) 128, 231, 999
BstNSI RCATGY 2 cut(s) 95, 367
BstPI GGTNACC 3 cut(s) 1020, 1082, 1109
BstSCI CCNGG 4 cut(s) 126, 229, 586, 997
BstSFI CTRYAG 3 cut(s) 736, 784, 871
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 8 cut(s) 69, 295, 560, 644, 722, 755, 857, 925
BstX2I RGATCY 3 cut(s) 123, 136, 858
BstXI CCANNNNNNTGG 2 cut(s) 68, 237
BstYI RGATCY 3 cut(s) 123, 136, 858
BstZI CGGCCG 1 cut(s) 1097
Bsu15I ATCGAT 1 cut(s) 358
BsuRI GGCC 9 cut(s) 234, 287, 586, 614, 634, 1058, 1062, 1099, 1103
BsuTUI ATCGAT 1 cut(s) 358
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 5 cut(s) 166, 575, 659, 807, 1140
BtsIMutI CAGTG 2 cut(s) 720, 1104
Cac8I GCNNGC 9 cut(s) 297, 390, 498, 671, 683, 687, 1060, 1097, 1101
CciI TCATGA 1 cut(s) 266
Cfr10I RCCGGY 6 cut(s) 634, 1003, 1024, 1058, 1095, 1099
Cfr13I GGNCC 4 cut(s) 460, 585, 919, 1001
ClaI ATCGAT 1 cut(s) 358
CseI GACGC 2 cut(s) 44, 74
Csp6I GTAC 3 cut(s) 328, 704, 902
CspAI ACCGGT 2 cut(s) 1003, 1024
CviAII CATG 6 cut(s) 92, 267, 291, 364, 438, 451
CviQI GTAC 3 cut(s) 328, 704, 902
DdeI CTNAG 1 cut(s) 173
DpnI GATC 8 cut(s) 125, 138, 601, 622, 744, 752, 860, 953
DpnII GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
EaeI YGGCCR 3 cut(s) 1060, 1097, 1101
EagI CGGCCG 1 cut(s) 1097
Eam1104I CTCTTC 2 cut(s) 176, 507
EarI CTCTTC 2 cut(s) 176, 507
EclXI CGGCCG 1 cut(s) 1097
Eco130I CCWWGG 2 cut(s) 10, 924
Eco147I AGGCCT 1 cut(s) 234
Eco47I GGWCC 3 cut(s) 460, 919, 1001
Eco52I CGGCCG 1 cut(s) 1097
Eco57I CTGAAG 1 cut(s) 883
Eco91I GGTNACC 3 cut(s) 1020, 1082, 1109
EcoO65I GGTNACC 3 cut(s) 1020, 1082, 1109
EcoRI GAATTC 2 cut(s) 892, 1034
EcoRII CCWGG 3 cut(s) 126, 229, 997
EcoT14I CCWWGG 2 cut(s) 10, 924
ErhI CCWWGG 2 cut(s) 10, 924
FaeI CATG 6 cut(s) 95, 270, 294, 367, 441, 454
FaiI YATR 9 cut(s) 93, 134, 238, 268, 292, 365, 398, 439, 452
FaqI GGGAC 3 cut(s) 42, 446, 905
FatI CATG 6 cut(s) 91, 266, 290, 363, 437, 450
FauI CCCGC 4 cut(s) 288, 385, 521, 771
FblI GTMKAC 1 cut(s) 472
FokI GGATG 5 cut(s) 173, 582, 666, 814, 1147
FseI GGCCGGCC 2 cut(s) 1062, 1103
FspBI CTAG 5 cut(s) 11, 497, 716, 841, 1066
GsaI CCCAGC 8 cut(s) 160, 351, 599, 680, 693, 714, 775, 800
HaeIII GGCC 9 cut(s) 234, 287, 586, 614, 634, 1058, 1062, 1099, 1103
HgaI GACGC 2 cut(s) 44, 74
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 6 cut(s) 95, 270, 294, 367, 441, 454
HincII GTYRAC 3 cut(s) 222, 456, 473
HindII GTYRAC 3 cut(s) 222, 456, 473
HinfI GANTC 5 cut(s) 201, 1014, 1049, 1076, 1090
HphI GGTGA 9 cut(s) 330, 549, 649, 986, 1014, 1035, 1062, 1076, 1103
Hpy166II GTNNAC 5 cut(s) 100, 222, 456, 473, 645
Hpy188I TCNGA 5 cut(s) 50, 141, 174, 863, 1054
Hpy188III TCNNGA 2 cut(s) 267, 624
Hpy8I GTNNAC 5 cut(s) 100, 222, 456, 473, 645
Hpy99I CGWCG 3 cut(s) 68, 90, 477
HpyAV CCTTC 5 cut(s) 186, 277, 511, 604, 846
HpyCH4III ACNGT 3 cut(s) 460, 724, 881
HpyCH4IV ACGT 4 cut(s) 63, 102, 333, 706
HpyF10VI GCNNNNNNNGC 8 cut(s) 88, 305, 432, 497, 592, 666, 682, 744
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 4 cut(s) 63, 102, 333, 706
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 6 cut(s) 95, 270, 294, 367, 441, 454
KroI GCCGGC 3 cut(s) 1058, 1095, 1099
KroNI GCCGGC 3 cut(s) 1060, 1097, 1101
Kzo9I GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 2 cut(s) 261, 525
Lsp1109I GCAGC 8 cut(s) 69, 295, 560, 644, 722, 755, 857, 925
LweI GCATC 2 cut(s) 560, 644
MaeI CTAG 5 cut(s) 11, 497, 716, 841, 1066
MaeII ACGT 4 cut(s) 63, 102, 333, 706
MaeIII GTNAC 9 cut(s) 374, 444, 813, 992, 1020, 1041, 1068, 1082, 1109
MalI GATC 8 cut(s) 125, 138, 601, 622, 744, 752, 860, 953
MbiI CCGCTC 1 cut(s) 528
MboI GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
MboII GAAGA 4 cut(s) 193, 494, 876, 901
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 3 cut(s) 123, 136, 858
MluCI AATT 5 cut(s) 407, 892, 932, 945, 1034
MlyI GAGTC 4 cut(s) 210, 1058, 1085, 1099
MmeI TCCRAC 1 cut(s) 524
MroNI GCCGGC 3 cut(s) 1058, 1095, 1099
MslI CAYNNNNRTG 3 cut(s) 66, 271, 652
MspA1I CMGCKG 1 cut(s) 916
MspR9I CCNGG 4 cut(s) 128, 231, 588, 999
MunI CAATTG 1 cut(s) 932
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 3 cut(s) 128, 231, 999
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 8 cut(s) 88, 305, 432, 497, 592, 666, 682, 744
NaeI GCCGGC 3 cut(s) 1060, 1097, 1101
NciI CCSGG 1 cut(s) 588
NdeII GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
NgoMIV GCCGGC 3 cut(s) 1058, 1095, 1099
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 6 cut(s) 95, 270, 294, 367, 441, 454
NlaIV GGNNCC 3 cut(s) 125, 462, 921
NmuCI GTSAC 8 cut(s) 444, 813, 992, 1020, 1041, 1068, 1082, 1109
NspI RCATGY 2 cut(s) 95, 367
PagI TCATGA 1 cut(s) 266
PceI AGGCCT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 507
PctI GAATGC 1 cut(s) 915
PdiI GCCGGC 3 cut(s) 1060, 1097, 1101
PfeI GAWTC 1 cut(s) 1014
Pfl23II CGTACG 1 cut(s) 703
PflFI GACNNNGTC 1 cut(s) 54
PinAI ACCGGT 2 cut(s) 1003, 1024
PleI GAGTC 4 cut(s) 209, 1057, 1084, 1098
PpsI GAGTC 4 cut(s) 209, 1057, 1084, 1098
Ppu21I YACGTR 1 cut(s) 707
Psp6I CCWGG 3 cut(s) 126, 229, 997
PspEI GGTNACC 3 cut(s) 1020, 1082, 1109
PspFI CCCAGC 8 cut(s) 156, 347, 595, 676, 689, 710, 771, 796
PspGI CCWGG 3 cut(s) 126, 229, 997
PspLI CGTACG 1 cut(s) 703
PspN4I GGNNCC 3 cut(s) 125, 462, 921
PspPI GGNCC 4 cut(s) 460, 585, 919, 1001
PstI CTGCAG 3 cut(s) 740, 788, 875
PsuI RGATCY 3 cut(s) 123, 136, 858
PsyI GACNNNGTC 1 cut(s) 54
PvuII CAGCTG 1 cut(s) 916
RigI GGCCGGCC 2 cut(s) 1062, 1103
RsaI GTAC 3 cut(s) 329, 705, 903
RsaNI GTAC 3 cut(s) 328, 704, 902
RseI CAYNNNNRTG 3 cut(s) 66, 271, 652
SalI GTCGAC 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 507
Sau3AI GATC 8 cut(s) 123, 136, 599, 620, 742, 750, 858, 951
Sau96I GGNCC 4 cut(s) 460, 585, 919, 1001
ScaI AGTACT 1 cut(s) 903
SchI GAGTC 4 cut(s) 210, 1058, 1085, 1099
ScrFI CCNGG 4 cut(s) 128, 231, 588, 999
SfaNI GCATC 2 cut(s) 560, 644
SfcI CTRYAG 3 cut(s) 736, 784, 871
SinI GGWCC 3 cut(s) 460, 919, 1001
SmiMI CAYNNNNRTG 3 cut(s) 66, 271, 652
SpeI ACTAGT 1 cut(s) 1065
Sse9I AATT 5 cut(s) 407, 892, 932, 945, 1034
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 9 cut(s) 72, 244, 295, 392, 528, 576, 615, 673, 778
SspMI CTAG 5 cut(s) 11, 497, 716, 841, 1066
StuI AGGCCT 1 cut(s) 234
StyD4I CCNGG 4 cut(s) 126, 229, 586, 997
StyI CCWWGG 2 cut(s) 10, 924
TaaI ACNGT 3 cut(s) 460, 724, 881
TaiI ACGT 4 cut(s) 66, 105, 336, 709
TaqI TCGA 5 cut(s) 66, 358, 472, 602, 623
TasI AATT 5 cut(s) 407, 892, 932, 945, 1034
TatI WGTACW 2 cut(s) 327, 901
TauI GCSGC 3 cut(s) 75, 617, 676
TfiI GAWTC 1 cut(s) 1014
TscAI CASTG 2 cut(s) 727, 1111
TseFI GTSAC 8 cut(s) 444, 813, 992, 1020, 1041, 1068, 1082, 1109
TseI GCWGC 8 cut(s) 82, 308, 573, 657, 735, 768, 870, 913
Tsp45I GTSAC 8 cut(s) 444, 813, 992, 1020, 1041, 1068, 1082, 1109
TspDTI ATGAA 2 cut(s) 255, 860
TspRI CASTG 2 cut(s) 727, 1111
Tth111I GACNNNGTC 1 cut(s) 54
VpaK11BI GGWCC 3 cut(s) 460, 919, 1001
XapI RAATTY 3 cut(s) 407, 892, 1034
XceI RCATGY 2 cut(s) 95, 367
XcmI CCANNNNNNNNNTGG 2 cut(s) 237, 931
XmaJI CCTAGG 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 5 cut(s) 11, 497, 716, 841, 1066
ZrmI AGTACT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.