Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Forward (+)

30371386 .. 30391037

Gene Structure 19652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGCTGCTGGGCGCGGGTCTGCAGGGAGGTTTGCGTGGGCTGTGGGACGCGCGCTGGAGCATCTCATAAGGTGGAGAATGAATTCACATTTCCTTGTGGTCCATCAGTGGCTGAGGATGATGAGGAAGTCACAGAAACGAAAATAAGAGCCTTCCTAGATGAAAAGGCATTAGATCTGAAGAAGCTGCAGACACCGTTATTTGAAGAATTCTTTAGTACTTTGAATGCAGCTGGTCCCCAAGCTTCTTCTTCCCCTGCTTTCTTTCAGCTTCTTCGTCAGCGACTCTTTCAGCTTCTTCGTCGGCGACCCGAAGGTCCCCCAAGTCGGTTCTTCGCCGCCCCGGAGCCCATCGCCTCCTCCCCTCCGGTCTCCGACATTTCCCCCTCCGGCAACTCTCTCTTTCCCGTCATGATCCCCCCGCCACGCCAGTCCACCGATGCCGCCCTCCCATTCTCTTCTCCCCCTGCCTCCCCCGGCCGCCGCGACTCCCTCACCTCCTCCGACCTCTTCACCTGCAAATCTCACACTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

179

Amino Acids

19.52

Weight (kDa)

6.73

Isoelectric Point (pI)

73.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
AasI	GACNNNNNNGTC	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	524
AccII	CGCG	4 cut(s)	16, 52, 54, 486
AciI	CCGC	6 cut(s)	16, 339, 422, 444, 481, 484
AclWI	GGATC	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	83, 209
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	206, 226
AluBI	AGCT	5 cut(s)	187, 233, 245, 271, 295
AluI	AGCT	5 cut(s)	187, 233, 245, 271, 295
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	6, 187, 230
ApoI	RAATTY	2 cut(s)	83, 209
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	3 cut(s)	16, 54, 56
AspS9I	GGNCC	3 cut(s)	101, 236, 317
AsuC2I	CCSGG	2 cut(s)	344, 477
AsuHPI	GGTGA	2 cut(s)	487, 505
AvaII	GGWCC	3 cut(s)	101, 236, 317
BanII	GRGCYC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	174, 242
BccI	CCATC	2 cut(s)	112, 359
BcnI	CCSGG	2 cut(s)	344, 477
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	2 cut(s)	22, 188
BfuAI	ACCTGC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	7 cut(s)	7, 188, 231, 339, 444, 481, 484
BlsI	GCNGC	7 cut(s)	8, 189, 232, 340, 445, 482, 485
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	344, 477
Bme18I	GGWCC	3 cut(s)	101, 236, 317
BmgT120I	GGNCC	3 cut(s)	101, 236, 317
BmiI	GGNNCC	3 cut(s)	238, 319, 348
BmrFI	CCNGG	2 cut(s)	344, 477
BmsI	GCATC	2 cut(s)	71, 430
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	344, 477
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	342, 475
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	342, 475
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	430
BsePI	GCGCGC	1 cut(s)	52
BseRI	GAGGAG	2 cut(s)	349, 490
BseX3I	CGGCCG	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	174, 242
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	4 cut(s)	16, 52, 54, 486
Bsh1285I	CGRYCG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	481
BsiSI	CCGG	4 cut(s)	344, 368, 390, 477
BslFI	GGGAC	3 cut(s)	61, 222, 303
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	3 cut(s)	61, 222, 303
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	480
Bso31I	GGTCTC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	175, 414
BspACI	CCGC	6 cut(s)	16, 339, 422, 444, 481, 484
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	4 cut(s)	16, 52, 54, 486
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	238, 319, 348
BspMAI	CTGCAG	2 cut(s)	26, 192
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	342, 475
BssHII	GCGCGC	1 cut(s)	52
BssMI	GATC	2 cut(s)	175, 414
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	463, 515
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	4 cut(s)	16, 52, 54, 486
BstHHI	GCGC	3 cut(s)	16, 54, 56
BstKTI	GATC	2 cut(s)	178, 417
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	2 cut(s)	175, 414
BstMCI	CGRYCG	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	342, 475
BstSFI	CTRYAG	2 cut(s)	22, 188
BstUI	CGCG	4 cut(s)	16, 52, 54, 486
BstV1I	GCAGC	2 cut(s)	174, 242
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	3 cut(s)	16, 54, 56
Cfr13I	GGNCC	3 cut(s)	101, 236, 317
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	1 cut(s)	412
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	177, 416
DpnII	GATC	2 cut(s)	175, 414
DrdI	GACNNNNNNGTC	1 cut(s)	315
DseDI	GACNNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	478
EagI	CGGCCG	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	463, 515
EarI	CTCTTC	2 cut(s)	463, 515
EclXI	CGGCCG	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	101, 236, 317
Eco52I	CGGCCG	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRI	GAATTC	2 cut(s)	83, 209
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	1 cut(s)	415
FaiI	YATR	2 cut(s)	69, 413
FaqI	GGGAC	3 cut(s)	61, 222, 303
FatI	CATG	1 cut(s)	411
FauI	CCCGC	2 cut(s)	9, 429
Fnu4HI	GCNGC	7 cut(s)	7, 188, 231, 339, 444, 481, 484
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	7 cut(s)	7, 188, 231, 339, 444, 481, 484
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	3 cut(s)	15, 53, 55
GluI	GCNGC	7 cut(s)	7, 188, 231, 339, 444, 481, 484
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	4 cut(s)	344, 368, 390, 477
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	3 cut(s)	16, 54, 56
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	3 cut(s)	14, 52, 54
HinP1I	GCGC	3 cut(s)	14, 52, 54
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	2 cut(s)	285, 488
HpaII	CCGG	4 cut(s)	344, 368, 390, 477
HphI	GGTGA	2 cut(s)	487, 505
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	3 cut(s)	180, 376, 505
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	163, 308
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	24, 190, 230, 519
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	3 cut(s)	14, 52, 54
Kzo9I	GATC	2 cut(s)	175, 414
LmnI	GCTCC	2 cut(s)	59, 346
Lsp1109I	GCAGC	2 cut(s)	174, 242
LweI	GCATC	2 cut(s)	71, 430
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	177, 416
MboI	GATC	2 cut(s)	175, 414
MboII	GAAGA	9 cut(s)	193, 218, 240, 243, 266, 290, 325, 450, 502
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	2 cut(s)	83, 209
MlyI	GAGTC	2 cut(s)	279, 482
MmeI	TCCRAC	2 cut(s)	399, 528
MroXI	GAANNNNTTC	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	4 cut(s)	344, 368, 390, 477
MspR9I	CCNGG	2 cut(s)	344, 477
Mva1269I	GAATGC	1 cut(s)	232
MvnI	CGCG	4 cut(s)	16, 52, 54, 486
NciI	CCSGG	2 cut(s)	344, 477
NdeII	GATC	2 cut(s)	175, 414
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	3 cut(s)	238, 319, 348
NmuCI	GTSAC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	411
PaqCI	CACCTGC	1 cut(s)	524
PauI	GCGCGC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	8, 189, 232, 340, 445, 482, 485
PleI	GAGTC	2 cut(s)	279, 482
PpsI	GAGTC	2 cut(s)	279, 482
PpuMI	RGGWCCY	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	238, 319, 348
PspPI	GGNCC	3 cut(s)	101, 236, 317
PspPPI	RGGWCCY	1 cut(s)	317
PstI	CTGCAG	2 cut(s)	26, 192
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	175
PteI	GCGCGC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SatI	GCNGC	7 cut(s)	7, 188, 231, 339, 444, 481, 484
Sau3AI	GATC	2 cut(s)	175, 414
Sau96I	GGNCC	3 cut(s)	101, 236, 317
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	2 cut(s)	279, 482
ScrFI	CCNGG	2 cut(s)	344, 477
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	2 cut(s)	71, 430
SfcI	CTRYAG	2 cut(s)	22, 188
SinI	GGWCC	3 cut(s)	101, 236, 317
Sse9I	AATT	2 cut(s)	83, 209
SsiI	CCGC	6 cut(s)	16, 339, 422, 444, 481, 484
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	342, 475
TaaI	ACNGT	1 cut(s)	198
TasI	AATT	2 cut(s)	83, 209
TatI	WGTACW	1 cut(s)	218
TauI	GCSGC	4 cut(s)	341, 446, 483, 486
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	6, 187, 230
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	96, 177
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	3 cut(s)	101, 236, 317
XapI	RAATTY	2 cut(s)	83, 209
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.