Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Reverse (-)

19364424 .. 19364723

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG148400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCAGCTGGTTGGTGCAATTGGAAATGCAAATTGTGATCGTGTTTCAAATAATCTGCATTTACTTCCTAAAAGCAAGTCACCCAGTCGGACACCTAGTAGAAGATTCTCTGCAATAGTTGGAACTGTCAATGGTTCACGCTTCGGGAAACACACCGTAAATGTATCAAATGCAAGTGGTGTGCATAGTCATATCTTACAGGAAATTCAGCCGCCTCAGCTTAATGAACAGAAAGAGCCTCTTGATGCTCAGAAAGATTCATATTTGTTTTTTTGTTTTTTTTCCCCCTCTTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

99

Amino Acids

10.98

Weight (kDa)

9.51

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	48
AluBI	AGCT	2 cut(s)	7, 220
AluI	AGCT	2 cut(s)	7, 220
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	5, 212
BlsI	GCNGC	2 cut(s)	6, 213
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	230, 263
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	229, 262
BsrI	ACTGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	127, 157
BstDEI	CTNAG	2 cut(s)	216, 249
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	16
CviJI	RGCY	4 cut(s)	7, 211, 220, 238
CviKI_1	RGCY	4 cut(s)	7, 211, 220, 238
DdeI	CTNAG	2 cut(s)	216, 249
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
FaiI	YATR	3 cut(s)	186, 192, 262
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
Fnu4HI	GCNGC	2 cut(s)	5, 212
Fsp4HI	GCNGC	2 cut(s)	5, 212
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	5, 212
HinfI	GANTC	2 cut(s)	105, 257
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	90, 252
Hpy188III	TCNNGA	2 cut(s)	145, 242
Hpy8I	GTNNAC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	127, 157
HpyCH4V	TGCA	7 cut(s)	4, 17, 29, 58, 113, 173, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	216, 249
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	97, 185, 280
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	114
MfeI	CAATTG	1 cut(s)	18
MluCI	AATT	3 cut(s)	18, 31, 204
MmeI	TCCRAC	2 cut(s)	68, 100
MnlI	CCTC	3 cut(s)	225, 249, 298
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	105, 257
PkrI	GCNGC	2 cut(s)	6, 213
PvuII	CAGCTG	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	5, 212
Sau3AI	GATC	1 cut(s)	37
SetI	ASST	3 cut(s)	9, 97, 222
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	3 cut(s)	18, 31, 204
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	127, 157
TasI	AATT	3 cut(s)	18, 31, 204
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	105, 257
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	240, 249
XapI	RAATTY	1 cut(s)	204
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.