Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015511.1

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Forward (+)

44774 .. 47905

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015511.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggcttctcagatcacatcggtggtgttacttgcggcgtgtttcgccgtcctgatcatggtttgtgcagctgttggagaaggccagcggcccgtacctcgaaacatgcaaggagtgaggcccgtacatgaaataaaagccttgaaagggttgaaagtcacagaaggcatgaggccaatacataaaaacatgaaagtcacagaaggcatgaggccaataccaaaagtcgtgacacagatggcgccgaagctcgacatgcccccaatgcctggtaccacccccgcgctcggcatgcggccaatacataaaaacatgaaagtcacaaaaggcatgaggccaataccaaaagtcgtgacagagatggcggcgccgaagctcgacatgcccccaatgcccggtatgcccccaatgcctgatatggccccgacgccgtcccccaactcaagcagcttcacatatccgtcactggtggttggattccttgctctcgtcgctcctgcgcgggggcaggaggcaagaggctggatgctgcggtgcttggcccggtgggctgggattgagtgggaaggtcgtcggatcgagatggaggcctgtgaggtggacacggggatgctgctattggtgcgtggggctgggcatgcaggctgcggggagggtcgtacgtgctgggctaggcactgtggtctggtgctgcagggatcgccggatcggtgctgtgatgggctgctgggcgctagtctgcagggagtggctggggatgatgaggaagtcacagaaacgaaaataagagccttcctacatgaaaaggcattagatctgaagaagctgcagacactgttatttgaagaattctttagtactttgaatgcagctggtccccaaggtgcaattggaaatgcaaattgtgatcgtgtttcaaataatctgcatttacctcctaaaagcaagtcacccaggaccggtcgccggattccggtcaccggagtccgaggccggctactagtcaccggagtcggcggccggccactggtcaccaaagtccggcaaggtggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

352

Amino Acids

37.76

Weight (kDa)

9.76

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	3 cut(s)	241, 272, 367
AccB7I	CCANNNNNTGG	1 cut(s)	269
AccII	CGCG	2 cut(s)	284, 502
AciI	CCGC	9 cut(s)	35, 88, 282, 295, 365, 502, 532, 648, 1017
AclWI	GGATC	3 cut(s)	584, 706, 714
AcoI	YGGCCR	3 cut(s)	296, 1018, 1022
AcsI	RAATTY	1 cut(s)	848
AcuI	CTGAAG	1 cut(s)	839
AcyI	GRCGYC	3 cut(s)	242, 368, 428
AfaI	GTAC	5 cut(s)	96, 126, 274, 661, 859
AgeI	ACCGGT	1 cut(s)	959
AgsI	TTSAA	5 cut(s)	145, 154, 845, 865, 918
AhlI	ACTAGT	1 cut(s)	1000
AjnI	CCWGG	2 cut(s)	268, 953
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	6 cut(s)	71, 250, 376, 450, 826, 872
AluI	AGCT	6 cut(s)	71, 250, 376, 450, 826, 872
AlwI	GGATC	3 cut(s)	584, 706, 714
AlwNI	CAGNNNCTG	1 cut(s)	835
ApeKI	GCWGC	9 cut(s)	68, 447, 529, 613, 645, 691, 724, 826, 869
ApoI	RAATTY	1 cut(s)	848
AsiGI	ACCGGT	1 cut(s)	959
Asp718I	GGTACC	1 cut(s)	272
AspLEI	GCGC	5 cut(s)	244, 286, 370, 502, 734
AspS9I	GGNCC	6 cut(s)	90, 120, 421, 541, 875, 957
AsuC2I	CCSGG	2 cut(s)	396, 544
AsuHPI	GGTGA	4 cut(s)	942, 970, 997, 1024
AvaII	GGWCC	2 cut(s)	875, 957
BanI	GGYRCC	3 cut(s)	241, 272, 367
BbvI	GCAGC	9 cut(s)	80, 459, 516, 600, 632, 678, 711, 813, 881
BccI	CCATC	4 cut(s)	232, 355, 577, 713
BceAI	ACGGC	2 cut(s)	32, 415
BciT130I	CCWGG	2 cut(s)	270, 955
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	2 cut(s)	396, 544
BcuI	ACTAGT	1 cut(s)	1000
BfaI	CTAG	3 cut(s)	672, 735, 1001
BfmI	CTRYAG	3 cut(s)	692, 740, 827
BfoI	RGCGCY	3 cut(s)	245, 371, 735
BglI	GCCNNNNNGGC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	814
BmcAI	AGTACT	1 cut(s)	859
Bme1390I	CCNGG	4 cut(s)	270, 396, 544, 955
Bme18I	GGWCC	2 cut(s)	875, 957
BmgT120I	GGNCC	6 cut(s)	90, 120, 421, 541, 875, 957
BmiI	GGNNCC	5 cut(s)	243, 274, 369, 423, 877
BmrFI	CCNGG	4 cut(s)	270, 396, 544, 955
BmsI	GCATC	2 cut(s)	516, 600
BpuEI	CTTGAG	1 cut(s)	427
BpuMI	CCSGG	2 cut(s)	396, 544
BsaAI	YACGTR	1 cut(s)	663
BsaHI	GRCGYC	3 cut(s)	242, 368, 428
BsaJI	CCNNGG	3 cut(s)	880, 953, 988
BsaWI	WCCGGW	4 cut(s)	959, 973, 980, 1007
Bse118I	RCCGGY	3 cut(s)	959, 993, 1020
Bse1I	ACTGG	2 cut(s)	471, 1032
BseBI	CCWGG	2 cut(s)	270, 955
BseDI	CCNNGG	3 cut(s)	880, 953, 988
BseGI	GGATG	3 cut(s)	531, 615, 763
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	471, 1032
BseX3I	CGGCCG	1 cut(s)	1018
BseXI	GCAGC	9 cut(s)	80, 459, 516, 600, 632, 678, 711, 813, 881
BseYI	CCCAGC	5 cut(s)	551, 632, 666, 727, 752
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	2 cut(s)	284, 502
Bsh1285I	CGRYCG	2 cut(s)	964, 1021
BshNI	GGYRCC	3 cut(s)	241, 272, 367
BshTI	ACCGGT	1 cut(s)	959
BsiEI	CGRYCG	2 cut(s)	964, 1021
BsiWI	CGTACG	1 cut(s)	659
BslFI	GGGAC	2 cut(s)	418, 861
BsmFI	GGGAC	2 cut(s)	418, 861
BsmI	GAATGC	1 cut(s)	871
Bsp143I	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
BspACI	CCGC	9 cut(s)	35, 88, 282, 295, 365, 502, 532, 648, 1017
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	2 cut(s)	284, 502
BspLI	GGNNCC	5 cut(s)	243, 274, 369, 423, 877
BspMAI	CTGCAG	3 cut(s)	696, 744, 831
BspPI	GGATC	3 cut(s)	584, 706, 714
BspT107I	GGYRCC	3 cut(s)	241, 272, 367
BsrFI	RCCGGY	3 cut(s)	959, 993, 1020
BsrI	ACTGG	2 cut(s)	471, 1032
BssAI	RCCGGY	3 cut(s)	959, 993, 1020
BssECI	CCNNGG	3 cut(s)	880, 953, 988
BssMI	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
BssNI	GRCGYC	3 cut(s)	242, 368, 428
BssT1I	CCWWGG	1 cut(s)	880
Bst2UI	CCWGG	2 cut(s)	270, 955
Bst4CI	ACNGT	2 cut(s)	680, 837
BstACI	GRCGYC	3 cut(s)	242, 368, 428
BstBAI	YACGTR	1 cut(s)	663
BstC8I	GCNNGC	6 cut(s)	86, 293, 639, 643, 995, 1022
BstDEI	CTNAG	1 cut(s)	9
BstEII	GGTNACC	2 cut(s)	976, 1030
BstF5I	GGATG	3 cut(s)	531, 615, 763
BstFNI	CGCG	2 cut(s)	284, 502
BstH2I	RGCGCY	3 cut(s)	245, 371, 735
BstHHI	GCGC	5 cut(s)	244, 286, 370, 502, 734
BstKTI	GATC	7 cut(s)	15, 57, 579, 701, 709, 817, 910
BstMBI	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
BstMCI	CGRYCG	2 cut(s)	964, 1021
BstNI	CCWGG	2 cut(s)	270, 955
BstNSI	RCATGY	5 cut(s)	109, 259, 295, 385, 641
BstPI	GGTNACC	2 cut(s)	976, 1030
BstSCI	CCNGG	4 cut(s)	268, 394, 542, 953
BstSFI	CTRYAG	3 cut(s)	692, 740, 827
BstUI	CGCG	2 cut(s)	284, 502
BstV1I	GCAGC	9 cut(s)	80, 459, 516, 600, 632, 678, 711, 813, 881
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BstZI	CGGCCG	1 cut(s)	1018
BtsCI	GGATG	3 cut(s)	531, 615, 763
BtsIMutI	CAGTG	4 cut(s)	464, 676, 833, 1025
Cac8I	GCNNGC	6 cut(s)	86, 293, 639, 643, 995, 1022
CaiI	CAGNNNCTG	1 cut(s)	835
CfoI	GCGC	5 cut(s)	244, 286, 370, 502, 734
Cfr10I	RCCGGY	3 cut(s)	959, 993, 1020
Cfr13I	GGNCC	6 cut(s)	90, 120, 421, 541, 875, 957
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	5 cut(s)	95, 125, 273, 660, 858
CspAI	ACCGGT	1 cut(s)	959
CviQI	GTAC	5 cut(s)	95, 125, 273, 660, 858
DdeI	CTNAG	1 cut(s)	9
DinI	GGCGCC	2 cut(s)	243, 369
DpnI	GATC	7 cut(s)	14, 56, 578, 700, 708, 816, 909
DpnII	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
EaeI	YGGCCR	3 cut(s)	296, 1018, 1022
EagI	CGGCCG	1 cut(s)	1018
EclXI	CGGCCG	1 cut(s)	1018
Eco130I	CCWWGG	1 cut(s)	880
Eco147I	AGGCCT	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	875, 957
Eco52I	CGGCCG	1 cut(s)	1018
Eco57I	CTGAAG	1 cut(s)	839
Eco91I	GGTNACC	2 cut(s)	976, 1030
EcoO65I	GGTNACC	2 cut(s)	976, 1030
EcoRI	GAATTC	1 cut(s)	848
EcoRII	CCWGG	2 cut(s)	268, 953
EcoT14I	CCWWGG	1 cut(s)	880
EgeI	GGCGCC	2 cut(s)	243, 369
EheI	GGCGCC	2 cut(s)	243, 369
ErhI	CCWWGG	1 cut(s)	880
FaqI	GGGAC	2 cut(s)	418, 861
FauI	CCCGC	3 cut(s)	289, 495, 641
FbaI	TGATCA	1 cut(s)	54
FokI	GGATG	3 cut(s)	538, 622, 770
FseI	GGCCGGCC	1 cut(s)	1024
FspBI	CTAG	3 cut(s)	672, 735, 1001
GlaI	GCGC	5 cut(s)	243, 285, 369, 501, 733
GsaI	CCCAGC	5 cut(s)	555, 636, 670, 731, 756
HaeII	RGCGCY	3 cut(s)	245, 371, 735
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	5 cut(s)	244, 286, 370, 502, 734
Hin1I	GRCGYC	3 cut(s)	242, 368, 428
Hin6I	GCGC	5 cut(s)	242, 284, 368, 500, 732
HinP1I	GCGC	5 cut(s)	242, 284, 368, 500, 732
HinfI	GANTC	4 cut(s)	477, 970, 984, 1011
HphI	GGTGA	4 cut(s)	942, 970, 997, 1024
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	4 cut(s)	12, 576, 819, 989
Hpy188III	TCNNGA	4 cut(s)	52, 229, 352, 580
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	3 cut(s)	430, 494, 576
HpyAV	CCTTC	5 cut(s)	74, 158, 197, 560, 802
HpyCH4III	ACNGT	2 cut(s)	680, 837
HpyCH4IV	ACGT	1 cut(s)	662
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	662
Hsp92I	GRCGYC	3 cut(s)	242, 368, 428
HspAI	GCGC	5 cut(s)	242, 284, 368, 500, 732
KasI	GGCGCC	2 cut(s)	241, 367
KpnI	GGTACC	1 cut(s)	276
KroI	GCCGGC	2 cut(s)	993, 1020
KroNI	GCCGGC	2 cut(s)	995, 1022
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	9 cut(s)	80, 459, 516, 600, 632, 678, 711, 813, 881
LweI	GCATC	2 cut(s)	516, 600
MaeI	CTAG	3 cut(s)	672, 735, 1001
MaeII	ACGT	1 cut(s)	662
MalI	GATC	7 cut(s)	14, 56, 578, 700, 708, 816, 909
MboI	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
MboII	GAAGA	2 cut(s)	832, 857
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	814
MluCI	AATT	3 cut(s)	848, 888, 901
Mly113I	GGCGCC	2 cut(s)	242, 368
MlyI	GAGTC	2 cut(s)	993, 1020
MmeI	TCCRAC	3 cut(s)	55, 454, 554
MroNI	GCCGGC	2 cut(s)	993, 1020
MslI	CAYNNNNRTG	2 cut(s)	20, 608
MspA1I	CMGCKG	3 cut(s)	71, 88, 872
MspR9I	CCNGG	4 cut(s)	270, 396, 544, 955
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	2 cut(s)	270, 955
MvnI	CGCG	2 cut(s)	284, 502
NaeI	GCCGGC	2 cut(s)	995, 1022
NarI	GGCGCC	2 cut(s)	242, 368
NciI	CCSGG	2 cut(s)	396, 544
NdeII	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
NgoMIV	GCCGGC	2 cut(s)	993, 1020
NlaIV	GGNNCC	5 cut(s)	243, 274, 369, 423, 877
NmeAIII	GCCGAG	1 cut(s)	267
NspI	RCATGY	5 cut(s)	109, 259, 295, 385, 641
OliI	CACNNNNGTG	1 cut(s)	20
PaeI	GCATGC	2 cut(s)	295, 641
PceI	AGGCCT	1 cut(s)	590
PctI	GAATGC	1 cut(s)	871
PdiI	GCCGGC	2 cut(s)	995, 1022
PfeI	GAWTC	2 cut(s)	477, 970
Pfl23II	CGTACG	1 cut(s)	659
PflFI	GACNNNGTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	269
PinAI	ACCGGT	1 cut(s)	959
PleI	GAGTC	2 cut(s)	992, 1019
PluTI	GGCGCC	2 cut(s)	245, 371
PpsI	GAGTC	2 cut(s)	992, 1019
Ppu21I	YACGTR	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	268, 953
PspEI	GGTNACC	2 cut(s)	976, 1030
PspFI	CCCAGC	5 cut(s)	551, 632, 666, 727, 752
PspGI	CCWGG	2 cut(s)	268, 953
PspLI	CGTACG	1 cut(s)	659
PspN4I	GGNNCC	5 cut(s)	243, 274, 369, 423, 877
PspPI	GGNCC	6 cut(s)	90, 120, 421, 541, 875, 957
PstI	CTGCAG	3 cut(s)	696, 744, 831
PstNI	CAGNNNCTG	1 cut(s)	835
PsuI	RGATCY	1 cut(s)	814
PsyI	GACNNNGTC	1 cut(s)	430
PvuII	CAGCTG	2 cut(s)	71, 872
RigI	GGCCGGCC	1 cut(s)	1024
RsaI	GTAC	5 cut(s)	96, 126, 274, 661, 859
RsaNI	GTAC	5 cut(s)	95, 125, 273, 660, 858
RseI	CAYNNNNRTG	2 cut(s)	20, 608
Sau3AI	GATC	7 cut(s)	12, 54, 576, 698, 706, 814, 907
Sau96I	GGNCC	6 cut(s)	90, 120, 421, 541, 875, 957
ScaI	AGTACT	1 cut(s)	859
SchI	GAGTC	2 cut(s)	993, 1020
ScrFI	CCNGG	4 cut(s)	270, 396, 544, 955
SfaNI	GCATC	2 cut(s)	516, 600
SfcI	CTRYAG	3 cut(s)	692, 740, 827
SfoI	GGCGCC	2 cut(s)	243, 369
SinI	GGWCC	2 cut(s)	875, 957
SmiMI	CAYNNNNRTG	2 cut(s)	20, 608
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
SpeI	ACTAGT	1 cut(s)	1000
SphI	GCATGC	2 cut(s)	295, 641
Sse9I	AATT	3 cut(s)	848, 888, 901
SseBI	AGGCCT	1 cut(s)	590
SsiI	CCGC	9 cut(s)	35, 88, 282, 295, 365, 502, 532, 648, 1017
SspDI	GGCGCC	2 cut(s)	241, 367
SspMI	CTAG	3 cut(s)	672, 735, 1001
StuI	AGGCCT	1 cut(s)	590
StyD4I	CCNGG	4 cut(s)	268, 394, 542, 953
StyI	CCWWGG	1 cut(s)	880
TaaI	ACNGT	2 cut(s)	680, 837
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	4 cut(s)	100, 252, 378, 579
TasI	AATT	3 cut(s)	848, 888, 901
TatI	WGTACW	1 cut(s)	857
TauI	GCSGC	5 cut(s)	38, 91, 298, 368, 1020
TfiI	GAWTC	2 cut(s)	477, 970
TscAI	CASTG	4 cut(s)	471, 683, 840, 1032
TseI	GCWGC	9 cut(s)	68, 447, 529, 613, 645, 691, 724, 826, 869
TspDTI	ATGAA	4 cut(s)	144, 206, 329, 816
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	4 cut(s)	471, 683, 840, 1032
Tth111I	GACNNNGTC	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	875, 957
XapI	RAATTY	1 cut(s)	848
XceI	RCATGY	5 cut(s)	109, 259, 295, 385, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	887
XspI	CTAG	3 cut(s)	672, 735, 1001
ZrmI	AGTACT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.