Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Forward (+)

24239881 .. 24267798

Gene Structure 27918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG251900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGCTTGGATCGCCGGATCGGTGCTGTGATGGGCTGCTGGGCGCGGGTCTGCAGGGAGGTCTGCGTGGACTGTGGGACGCGCGCTGGAGCATCTCATAAGGTGGAGAATGAATTCACATTTCCTTGTGGTCCATCAGTGGCTGGGGATGATGAGGAAGTCACAGAAACGAAAATAAGAGCCTTCCTAGATAAAAAGATCCCCTTTCTCACGCTCAATTACCTCCTCCATGGAAAAAACGCGTTCCTCTCGTGGAAAATTAAGGCCCACGCGCTATGTAAAAGTCTTGCATTTCTTGTTTGGAAATTGCTTCTCTATTTCATTAAGCTCAGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

112

Amino Acids

12.67

Weight (kDa)

9.15

Isoelectric Point (pI)

18.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	46, 82, 84, 242, 272
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	3 cut(s)	18, 26, 193
AcsI	RAATTY	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	240
AluBI	AGCT	2 cut(s)	6, 328
AluI	AGCT	2 cut(s)	6, 328
AlwI	GGATC	3 cut(s)	18, 26, 193
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	4 cut(s)	46, 84, 86, 274
AspS9I	GGNCC	2 cut(s)	131, 265
AvaII	GGWCC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	25, 142
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	131, 265
BmsI	GCATC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	154
BsePI	GCGCGC	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	23
BseYI	CCCAGC	2 cut(s)	39, 143
Bsh1236I	CGCG	5 cut(s)	46, 82, 84, 242, 272
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	10, 18, 198
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	266
BspFNI	CGCG	5 cut(s)	46, 82, 84, 242, 272
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	3 cut(s)	18, 26, 193
BssECI	CCNNGG	1 cut(s)	229
BssHII	GCGCGC	1 cut(s)	82
BssMI	GATC	3 cut(s)	10, 18, 198
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	5 cut(s)	46, 82, 84, 242, 272
BstHHI	GCGC	4 cut(s)	46, 84, 86, 274
BstKTI	GATC	3 cut(s)	13, 21, 201
BstMBI	GATC	3 cut(s)	10, 18, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	5 cut(s)	46, 82, 84, 242, 272
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	4 cut(s)	46, 84, 86, 274
Cfr13I	GGNCC	2 cut(s)	131, 265
CseI	GACGC	1 cut(s)	88
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	6 cut(s)	6, 36, 143, 182, 266, 328
CviKI_1	RGCY	6 cut(s)	6, 36, 143, 182, 266, 328
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	12, 20, 200
DpnII	GATC	3 cut(s)	10, 18, 198
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	233
FaiI	YATR	3 cut(s)	99, 231, 277
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	229
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	4 cut(s)	45, 83, 85, 273
GluI	GCNGC	1 cut(s)	37
GsaI	CCCAGC	2 cut(s)	43, 147
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	4 cut(s)	46, 84, 86, 274
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	4 cut(s)	44, 82, 84, 272
HinP1I	GCGC	4 cut(s)	44, 82, 84, 272
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	54, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	4 cut(s)	44, 82, 84, 272
Kzo9I	GATC	3 cut(s)	10, 18, 198
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	5 cut(s)	25, 29, 40, 72, 129
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	3 cut(s)	12, 20, 200
MboI	GATC	3 cut(s)	10, 18, 198
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	4 cut(s)	113, 217, 258, 305
MluI	ACGCGT	1 cut(s)	240
MnlI	CCTC	5 cut(s)	52, 148, 233, 236, 257
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	2 cut(s)	261, 324
MspI	CCGG	1 cut(s)	16
MvnI	CGCG	5 cut(s)	46, 82, 84, 242, 272
MwoI	GCNNNNNNNGC	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	10, 18, 198
NlaIII	CATG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	160
PauI	GCGCGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	38
PspFI	CCCAGC	2 cut(s)	39, 143
PspPI	GGNCC	2 cut(s)	131, 265
PstI	CTGCAG	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	198
PteI	GCGCGC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	261, 324
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	3 cut(s)	10, 18, 198
Sau96I	GGNCC	2 cut(s)	131, 265
SetI	ASST	5 cut(s)	8, 63, 105, 225, 330
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	113, 217, 258, 305
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	74
TasI	AATT	4 cut(s)	113, 217, 258, 305
Tru1I	TTAA	2 cut(s)	261, 324
Tru9I	TTAA	2 cut(s)	261, 324
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	126, 310
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.