Rroxscaffold_3G00263410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010560
Physical Location & Seq
Forward (+)
57350198 .. 57350524
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263410.1

Sequence Viewer

Length: 327 bp
ATGGTTTCCTTTCAGGCCTTTGGCCGGGTCACGACAGGGGTGGAGGATCCTAGTTATGGATCTGATGGGTATGAGCGGCTGGGATGGTTTCACTCCGAGGTGGAAGGGGATAGAAAGGTGGAGAGTCAAAGGTTGGTGGTGGTCAGCAAATCCAAACTTGCAGTGGCGGTGCAGATTGCTCCATCTTTCATAGTTTTCGGTGCTTTTCTTTGTCAACGGTCCAGTTTTGTCCTAGATCTAGTCGGAGACTATGTAAAGAGTGGAGGTGGAAGGCCACACGGCGGGCTTGGGTGGCTACAATGGGGTGAGATTGTGCGGCTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.77

Weight (kDa)

6.72

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 4 cut(s) 76, 167, 282, 316
AclWI GGATC 3 cut(s) 41, 54, 67
AcoI YGGCCR 1 cut(s) 22
AfiI CCNNNNNNNGG 3 cut(s) 24, 56, 281
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 3 cut(s) 41, 54, 67
AoxI GGCC 3 cut(s) 15, 22, 272
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 219
BamHI GGATCC 1 cut(s) 46
BccI CCATC 3 cut(s) 59, 78, 190
BceAI ACGGC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 3 cut(s) 51, 233, 239
BglII AGATCT 1 cut(s) 235
BisI GCNGC 2 cut(s) 77, 317
BlsI GCNGC 2 cut(s) 78, 318
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 56, 281
Bse1I ACTGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 3 cut(s) 24, 56, 281
BseNI ACTGG 1 cut(s) 222
BseYI CCCAGC 2 cut(s) 79, 319
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 3 cut(s) 17, 24, 274
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 3 cut(s) 24, 56, 281
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 3 cut(s) 17, 24, 274
Bsp143I GATC 3 cut(s) 46, 59, 235
BspACI CCGC 4 cut(s) 76, 167, 282, 316
BspANI GGCC 3 cut(s) 17, 24, 274
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 3 cut(s) 41, 54, 67
BsrBI CCGCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 46, 59, 235
Bst4CI ACNGT 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 284
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 3 cut(s) 49, 62, 238
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 3 cut(s) 46, 59, 235
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 24
BstX2I RGATCY 3 cut(s) 46, 59, 235
BstYI RGATCY 3 cut(s) 46, 59, 235
BsuRI GGCC 3 cut(s) 17, 24, 274
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 219
CviJI RGCY 8 cut(s) 17, 24, 79, 274, 286, 295, 319, 324
CviKI_1 RGCY 8 cut(s) 17, 24, 79, 274, 286, 295, 319, 324
DpnI GATC 3 cut(s) 48, 61, 237
DpnII GATC 3 cut(s) 46, 59, 235
EaeI YGGCCR 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 219
FaiI YATR 4 cut(s) 57, 72, 191, 252
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 77, 317
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 77, 317
FspBI CTAG 3 cut(s) 51, 233, 239
GluI GCNGC 2 cut(s) 77, 317
GsaI CCCAGC 2 cut(s) 83, 323
HaeIII GGCC 3 cut(s) 17, 24, 274
HapII CCGG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 25
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 64, 97, 245
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 98, 264
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 161, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 46, 59, 235
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 5 cut(s) 21, 38, 65, 235, 305
MaeI CTAG 3 cut(s) 51, 233, 239
MaeIII GTNAC 1 cut(s) 28
MalI GATC 3 cut(s) 48, 61, 237
MbiI CCGCTC 1 cut(s) 76
MboI GATC 3 cut(s) 46, 59, 235
MflI RGATCY 3 cut(s) 46, 59, 235
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 3 cut(s) 37, 91, 257
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 1 cut(s) 26
NdeII GATC 3 cut(s) 46, 59, 235
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 17
PkrI GCNGC 2 cut(s) 78, 318
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PspFI CCCAGC 2 cut(s) 79, 319
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 3 cut(s) 46, 59, 235
SatI GCNGC 2 cut(s) 77, 317
Sau3AI GATC 3 cut(s) 46, 59, 235
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 26
SetI ASST 4 cut(s) 102, 120, 134, 268
SinI GGWCC 1 cut(s) 219
SseBI AGGCCT 1 cut(s) 17
SsiI CCGC 4 cut(s) 76, 167, 282, 316
SspMI CTAG 3 cut(s) 51, 233, 239
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 219
TauI GCSGC 2 cut(s) 79, 319
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 178
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 3 cut(s) 51, 233, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.