Rroxscaffold_5G00385140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010560
Physical Location & Seq
Forward (+)
64288433 .. 64288855
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385140.1

Sequence Viewer

Length: 423 bp
ATGGCTTCTCAGATCACATCGGCGGTGTTACTTGCGGCGTGTTTCGCTGTCCTGATCATGGTTTGTGCAGCTGTTGGAGAAGGCCAGCGGCCCGTACCTCGAAACATGCAGGGAGTGAGGCCAGTACATGAAATAAAAGCCTTGAAAGGGTTGAAAGTCACAAAAGGCATGCGGCCAATACACAAAAACATGGAAGTCACGAAAGGTATGAGGCCAATACATAAAAACATGAAAGTCACAGAAGGCATGAGGCCAATACCAAAAGTCGTGACACAGATGGCGCCGAAGCTCGACATGCCCCCAATGCCCGGTATGCCCCCAATGCCTGATATGGCCCCAGCGCGGTCCCCCAACTCAAGCAGCTTCACATATCCGTCACTGGTGGTTGGATTCCTTGCTCTCGTCGCTGTCTTCTGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.08

Weight (kDa)

10.25

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccII CGCG 1 cut(s) 343
AciI CCGC 5 cut(s) 23, 35, 88, 172, 343
AcoI YGGCCR 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 2 cut(s) 96, 126
AfiI CCNNNNNNNGG 4 cut(s) 58, 147, 308, 342
AgsI TTSAA 2 cut(s) 145, 154
AluBI AGCT 3 cut(s) 71, 289, 363
AluI AGCT 3 cut(s) 71, 289, 363
AoxI GGCC 7 cut(s) 82, 89, 119, 173, 212, 251, 333
ApeKI GCWGC 2 cut(s) 68, 360
AspLEI GCGC 2 cut(s) 283, 343
AspS9I GGNCC 3 cut(s) 90, 334, 345
AsuC2I CCSGG 1 cut(s) 309
AvaII GGWCC 1 cut(s) 345
BanI GGYRCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 403
BbvI GCAGC 2 cut(s) 80, 372
BccI CCATC 1 cut(s) 271
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 1 cut(s) 309
BfaI CTAG 1 cut(s) 421
BfoI RGCGCY 1 cut(s) 284
BisI GCNGC 5 cut(s) 36, 69, 89, 173, 361
BlsI GCNGC 5 cut(s) 37, 70, 90, 174, 362
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 3 cut(s) 90, 334, 345
BmiI GGNNCC 3 cut(s) 282, 336, 347
BmrFI CCNGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 281
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 147, 308, 342
Bse1I ACTGG 2 cut(s) 122, 384
BseLI CCNNNNNNNGG 4 cut(s) 58, 147, 308, 342
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 122, 384
BseXI GCAGC 2 cut(s) 80, 372
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 7 cut(s) 84, 91, 121, 175, 214, 253, 335
BshNI GGYRCC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 4 cut(s) 58, 147, 308, 342
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 7 cut(s) 84, 91, 121, 175, 214, 253, 335
Bsp143I GATC 2 cut(s) 12, 54
BspACI CCGC 5 cut(s) 23, 35, 88, 172, 343
BspANI GGCC 7 cut(s) 84, 91, 121, 175, 214, 253, 335
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 282, 336, 347
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 122, 384
BssMI GATC 2 cut(s) 12, 54
BssNI GRCGYC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 86, 170
BstDEI CTNAG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 2 cut(s) 283, 343
BstKTI GATC 2 cut(s) 15, 57
BstMBI GATC 2 cut(s) 12, 54
BstMWI GCNNNNNNNGC 6 cut(s) 44, 295, 304, 313, 322, 404
BstNSI RCATGY 3 cut(s) 109, 172, 298
BstSCI CCNGG 1 cut(s) 307
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 80, 372
BstV2I GAAGAC 1 cut(s) 403
BsuRI GGCC 7 cut(s) 84, 91, 121, 175, 214, 253, 335
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 2 cut(s) 86, 170
CfoI GCGC 2 cut(s) 283, 343
Cfr13I GGNCC 3 cut(s) 90, 334, 345
Csp6I GTAC 2 cut(s) 95, 125
CviAII CATG 8 cut(s) 58, 106, 128, 169, 190, 229, 247, 295
CviQI GTAC 2 cut(s) 95, 125
DdeI CTNAG 1 cut(s) 9
DinI GGCGCC 1 cut(s) 282
DpnI GATC 2 cut(s) 14, 56
DpnII GATC 2 cut(s) 12, 54
EaeI YGGCCR 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 345
EgeI GGCGCC 1 cut(s) 282
EheI GGCGCC 1 cut(s) 282
FaeI CATG 8 cut(s) 61, 109, 131, 172, 193, 232, 250, 298
FaqI GGGAC 1 cut(s) 331
FatI CATG 8 cut(s) 57, 105, 127, 168, 189, 228, 246, 294
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 5 cut(s) 36, 69, 89, 173, 361
Fsp4HI GCNGC 5 cut(s) 36, 69, 89, 173, 361
FspBI CTAG 1 cut(s) 421
GlaI GCGC 2 cut(s) 282, 342
GluI GCNGC 5 cut(s) 36, 69, 89, 173, 361
GsaI CCCAGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 7 cut(s) 84, 91, 121, 175, 214, 253, 335
HapII CCGG 1 cut(s) 309
HhaI GCGC 2 cut(s) 283, 343
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 8 cut(s) 61, 109, 131, 172, 193, 232, 250, 298
Hin6I GCGC 2 cut(s) 281, 341
HinP1I GCGC 2 cut(s) 281, 341
HinfI GANTC 1 cut(s) 390
HpaII CCGG 1 cut(s) 309
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 52, 199, 268
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 74, 236
HpyCH4V TGCA 2 cut(s) 68, 109
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 295, 304, 313, 322, 404
HpyF3I CTNAG 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 8 cut(s) 61, 109, 131, 172, 193, 232, 250, 298
HspAI GCGC 2 cut(s) 281, 341
KasI GGCGCC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 12, 54
LpnPI CCDG 8 cut(s) 65, 95, 98, 135, 322, 339, 351, 365
Lsp1109I GCAGC 2 cut(s) 80, 372
MaeI CTAG 1 cut(s) 421
MaeIII GTNAC 6 cut(s) 27, 157, 196, 235, 268, 375
MalI GATC 2 cut(s) 14, 56
MboI GATC 2 cut(s) 12, 54
MboII GAAGA 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 55, 367
MnlI CCTC 4 cut(s) 108, 111, 204, 243
MspA1I CMGCKG 2 cut(s) 71, 88
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 6 cut(s) 44, 295, 304, 313, 322, 404
NarI GGCGCC 1 cut(s) 281
NciI CCSGG 1 cut(s) 309
NdeII GATC 2 cut(s) 12, 54
NlaIII CATG 8 cut(s) 61, 109, 131, 172, 193, 232, 250, 298
NlaIV GGNNCC 3 cut(s) 282, 336, 347
NmuCI GTSAC 5 cut(s) 157, 196, 235, 268, 375
NspI RCATGY 3 cut(s) 109, 172, 298
PaeI GCATGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 5 cut(s) 37, 70, 90, 174, 362
PluTI GGCGCC 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 337
PspN4I GGNNCC 3 cut(s) 282, 336, 347
PspPI GGNCC 3 cut(s) 90, 334, 345
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 96, 126
RsaNI GTAC 2 cut(s) 95, 125
SatI GCNGC 5 cut(s) 36, 69, 89, 173, 361
Sau3AI GATC 2 cut(s) 12, 54
Sau96I GGNCC 3 cut(s) 90, 334, 345
ScrFI CCNGG 1 cut(s) 309
SetI ASST 5 cut(s) 73, 100, 208, 291, 365
SfoI GGCGCC 1 cut(s) 282
SinI GGWCC 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SphI GCATGC 1 cut(s) 172
SsiI CCGC 5 cut(s) 23, 35, 88, 172, 343
SspDI GGCGCC 1 cut(s) 280
SspMI CTAG 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 307
TaqI TCGA 2 cut(s) 100, 291
TatI WGTACW 1 cut(s) 124
TauI GCSGC 3 cut(s) 38, 91, 175
TfiI GAWTC 1 cut(s) 390
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 5 cut(s) 157, 196, 235, 268, 375
TseI GCWGC 2 cut(s) 68, 360
Tsp45I GTSAC 5 cut(s) 157, 196, 235, 268, 375
TspDTI ATGAA 2 cut(s) 144, 245
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 345
XceI RCATGY 3 cut(s) 109, 172, 298
XspI CTAG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.