Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Forward (+)

4274442 .. 4274861

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG062400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGACGTGGATACTAGCCACCAAACTGATTTTCCGGCTGGCTGCTCTGGAACAATGGATGTGGGTGAAAAAGATTTTTCATTTCCTTGTGGACCATCTCTTTCAGAGGATGATGATGAACTTACTGAATCAAAAATTACTGCGTTCTTGGATGAAAAGGCTCTAGAACTGAAAAAAACTGCAAACACCTCTATACGAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

68

Amino Acids

7.43

Weight (kDa)

4.29

Isoelectric Point (pI)

25.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjiI	CACGTC	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
ApeKI	GCWGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	4
BfaI	CTAG	2 cut(s)	15, 164
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	92
BseGI	GGATG	3 cut(s)	64, 115, 157
BseXI	GCAGC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	64, 115, 157
BstV1I	GCAGC	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	4
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	3 cut(s)	64, 115, 157
Cac8I	GCNNGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	92
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviJI	RGCY	4 cut(s)	18, 38, 42, 161
CviKI_1	RGCY	4 cut(s)	18, 38, 42, 161
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	92
FaiI	YATR	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	3 cut(s)	71, 122, 164
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	2 cut(s)	15, 164
GluI	GCNGC	1 cut(s)	43
HapII	CCGG	1 cut(s)	35
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	48, 164
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	6
LpnPI	CCDG	3 cut(s)	24, 33, 48
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	15, 164
MaeII	ACGT	1 cut(s)	6
MluCI	AATT	1 cut(s)	135
MnlI	CCTC	2 cut(s)	100, 199
MspI	CCGG	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	92
SatI	GCNGC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	92
SetI	ASST	2 cut(s)	9, 191
SgeI	CNNG	8 cut(s)	19, 27, 47, 51, 60, 99, 160, 176
SinI	GGWCC	1 cut(s)	92
Sse9I	AATT	1 cut(s)	135
SspMI	CTAG	2 cut(s)	15, 164
TaiI	ACGT	1 cut(s)	9
TasI	AATT	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	69, 132, 168
VpaK11BI	GGWCC	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	2 cut(s)	15, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.