Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Reverse (-)

21823077 .. 21825638

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG115300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAGAGTAGGTCGACGGCAATGTGGCAGAGCTTGGCTAGCTCTTCTTCTTTGGAGGAAGGGAGGGAGCGGGGGGTGGTGGTGTTGGAGAGATTGGAACTTGTGGCTGGGGATGATGAGGAAGTCACAGAAACGAAAATAAGAGCCTTCCTAGATGAAAAGGCATTAGATCTGAAGAAGCTGCAGACACCGTTATTTGAAGAATTCTTTAGTACTTTGAATGCAGCTGGTCCCCAAGTAAGATCGGGGCTGGAAATCAGACCTTGGCCCTTGGGGATGCCTGGGGATTTCCACGTACCTGCAAAGCTGTTGTCAGCGGCAGGTTTGGTGGTTCAGGAGTTTTTGGGCATACAAGGAAGCACAGGCCCAAAGCGTTTTCCTGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

129

Amino Acids

14.13

Weight (kDa)

4.93

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	307, 311
AccBSI	CCGCTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	2 cut(s)	70, 317
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	2 cut(s)	214, 297
AgsI	TTSAA	2 cut(s)	200, 220
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	33, 42, 181, 227, 307
AluI	AGCT	5 cut(s)	33, 42, 181, 227, 307
AoxI	GGCC	2 cut(s)	266, 364
ApeKI	GCWGC	2 cut(s)	181, 224
ApoI	RAATTY	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspS9I	GGNCC	3 cut(s)	230, 267, 365
AsuNHI	GCTAGC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	168, 236
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	2 cut(s)	39, 152
BfmI	CTRYAG	1 cut(s)	182
BfuAI	ACCTGC	2 cut(s)	307, 311
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	3 cut(s)	182, 225, 318
BlsI	GCNGC	3 cut(s)	183, 226, 319
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	230, 267, 365
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	267
BmtI	GCTAGC	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	295
BsaJI	CCNNGG	3 cut(s)	263, 270, 281
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	263, 270, 281
BseGI	GGATG	2 cut(s)	118, 282
BseMI	GCAATG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	168, 236
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	2 cut(s)	268, 366
BslFI	GGGAC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	268, 366
Bsp143I	GATC	2 cut(s)	169, 242
BspACI	CCGC	2 cut(s)	70, 317
BspANI	GGCC	2 cut(s)	268, 366
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	186
BspMI	ACCTGC	2 cut(s)	307, 311
BspOI	GCTAGC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	263, 270, 281
BssMI	GATC	2 cut(s)	169, 242
BssT1I	CCWWGG	2 cut(s)	263, 270
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	118, 282
BstKTI	GATC	2 cut(s)	172, 245
BstMBI	GATC	2 cut(s)	169, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	168, 236
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	268, 366
BtsCI	GGATG	2 cut(s)	118, 282
BveI	ACCTGC	2 cut(s)	307, 311
Cac8I	GCNNGC	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	230, 267, 365
Csp6I	GTAC	2 cut(s)	213, 296
CviQI	GTAC	2 cut(s)	213, 296
DpnI	GATC	2 cut(s)	171, 244
DpnII	GATC	2 cut(s)	169, 242
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	263, 270
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	263, 270
ErhI	CCWWGG	2 cut(s)	263, 270
FaiI	YATR	1 cut(s)	350
FaqI	GGGAC	1 cut(s)	216
FauI	CCCGC	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	182, 225, 318
FokI	GGATG	2 cut(s)	125, 289
Fsp4HI	GCNGC	3 cut(s)	182, 225, 318
FspBI	CTAG	2 cut(s)	39, 152
GluI	GCNGC	3 cut(s)	182, 225, 318
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	268, 366
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	174, 260
Hpy188III	TCNNGA	2 cut(s)	335, 380
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	53, 157, 377
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	4, 184, 224, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	169, 242
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	9 cut(s)	93, 213, 236, 267, 294, 306, 312, 320, 348
Lsp1109I	GCAGC	2 cut(s)	168, 236
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	39, 152
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	171, 244
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	2 cut(s)	169, 242
MboII	GAAGA	4 cut(s)	36, 39, 187, 212
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	49, 57, 112
MspA1I	CMGCKG	2 cut(s)	227, 317
MspR9I	CCNGG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	2 cut(s)	169, 242
NheI	GCTAGC	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	49
PctI	GAATGC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	183, 226, 319
Ppu21I	YACGTR	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	230, 267, 365
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	214, 297
RsaNI	GTAC	2 cut(s)	213, 296
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	49
SatI	GCNGC	3 cut(s)	182, 225, 318
Sau3AI	GATC	2 cut(s)	169, 242
Sau96I	GGNCC	3 cut(s)	230, 267, 365
ScaI	AGTACT	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	2 cut(s)	70, 317
SspMI	CTAG	2 cut(s)	39, 152
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	2 cut(s)	263, 270
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	203
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	181, 224
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	2 cut(s)	39, 152
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.