Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010560

Physical Location & Seq

Genomic Coordinates Forward (+)

27872320 .. 27891971

Gene Structure 19652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG147800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGCTGCTGGGCGCGGGTCTGCAGGGAGGTTTGCGTGGGCTGTGGGACGCGCGCTGGAGCATCTCATAAGGTGGAGAATGAATTCACATTTCCTTGTGGTCCATCAGTGGCTGAGGATGATGAGGAAGTCACAGAAACGAAAATAAGAGCCTTCCTAGATGAAAAGGCATTAGATCTGAAGAAGCTGCAGACACCGTTATTTGAAGAATTCTTTAGTACTTTGAATGCAGCTGGTCCCCAAGACTACATATGCGACAAGATTGCTTCACTTAAGAGGGGCCGATATGAATGGGAGGCGGCACAATGCTTCGTCTTGGATGGCTCAGGTGCCCATAGCAATTCTAAATGGGCTAGGGCTTTTGCCATATATGCTTTACCAGGTTTGACTTTTGCTGAAGCAGGTGGCATGCTGGAATTCCAAGCAGGGCTTGCTTCTTCTTCCCCTGCTTTCTTTCAGCTTCTTCGTCAGCGACTCTTTCAGCTTCTTCGTCGGCGACCCGAAGGTCCCCCAAGTCGGTTCTTCGCCGCCCCGGAGCCCATCGCCTCCTCCCCTCCGGTCTCCGACATTTCCCCCTCCGGCAACTCTCTCTTTCCCGTCATGATCCCCCCGCCACGCCAGTCCACCGATGCCGCCCTCCCATTCTCTTCTCCCCCTGCCTCCCCCGGCCGCCGCGACTCCCTCACCTCCTCCGACCTCTTCACCTGCAAATCTCACACTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

242

Amino Acids

26.37

Weight (kDa)

6.33

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35071
rosa_laevigata	RLG00000005813 RLG00000024320
rosa_multiflora	Rmu_sc0015511.1_g000015 Rmu_sc0017177.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263410 Rroxscaffold_5G00385140
rosa_rugosa	Rorug04G0043700.1 Rorug04G0354400
rosa_samantha	Rh1AG147800 Rh1CG139200 Rh1CG282800 Rh3AG061700 Rh3BG063500 Rh3CG062400 Rh4AG414600 Rh4CG115300 Rh4CG441200 Rh4DG422200 Rh6CG148400 Rh7CG251900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	392, 713
AasI	GACNNNNNNGTC	1 cut(s)	504
Acc36I	ACCTGC	2 cut(s)	392, 713
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	4 cut(s)	16, 52, 54, 675
AciI	CCGC	7 cut(s)	16, 299, 528, 611, 633, 670, 673
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	3 cut(s)	83, 209, 416
AcuI	CTGAAG	2 cut(s)	200, 417
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	516
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	206, 226
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	187, 233, 460, 484
AluI	AGCT	4 cut(s)	187, 233, 460, 484
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	280, 667
ApeKI	GCWGC	3 cut(s)	6, 187, 230
ApoI	RAATTY	3 cut(s)	83, 209, 416
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	3 cut(s)	16, 54, 56
AspS9I	GGNCC	4 cut(s)	101, 236, 280, 506
AsuC2I	CCSGG	2 cut(s)	533, 666
AsuHPI	GGTGA	2 cut(s)	676, 694
AvaII	GGWCC	3 cut(s)	101, 236, 506
BaeGI	GKGCMC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	174, 242
BccI	CCATC	3 cut(s)	112, 314, 548
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	2 cut(s)	533, 666
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	2 cut(s)	158, 354
BfmI	CTRYAG	2 cut(s)	22, 188
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	2 cut(s)	392, 713
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	8 cut(s)	7, 188, 231, 300, 528, 633, 670, 673
BlsI	GCNGC	8 cut(s)	8, 189, 232, 301, 529, 634, 671, 674
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	381, 533, 666
Bme18I	GGWCC	3 cut(s)	101, 236, 506
BmgT120I	GGNCC	4 cut(s)	101, 236, 280, 506
BmiI	GGNNCC	5 cut(s)	238, 281, 331, 508, 537
BmrFI	CCNGG	3 cut(s)	381, 533, 666
BmsI	GCATC	2 cut(s)	71, 619
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	2 cut(s)	114, 325
BpuMI	CCSGG	2 cut(s)	533, 666
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	531, 664
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse1I	ACTGG	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	531, 664
BseGI	GGATG	2 cut(s)	124, 325
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	105, 339
BseNI	ACTGG	1 cut(s)	619
BsePI	GCGCGC	1 cut(s)	52
BseRI	GAGGAG	2 cut(s)	538, 679
BseSI	GKGCMC	1 cut(s)	334
BseX3I	CGGCCG	1 cut(s)	667
BseXI	GCAGC	2 cut(s)	174, 242
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	4 cut(s)	16, 52, 54, 675
Bsh1285I	CGRYCG	1 cut(s)	670
BshFI	GGCC	2 cut(s)	282, 669
BshNI	GGYRCC	1 cut(s)	329
BsiEI	CGRYCG	1 cut(s)	670
BsiSI	CCGG	4 cut(s)	533, 557, 579, 666
BslFI	GGGAC	3 cut(s)	61, 222, 492
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	3 cut(s)	61, 222, 492
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	282, 669
Bso31I	GGTCTC	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	334, 540
Bsp143I	GATC	2 cut(s)	175, 603
BspACI	CCGC	7 cut(s)	16, 299, 528, 611, 633, 670, 673
BspANI	GGCC	2 cut(s)	282, 669
BspCNI	CTCAG	2 cut(s)	106, 338
BspFNI	CGCG	4 cut(s)	16, 52, 54, 675
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	5 cut(s)	238, 281, 331, 508, 537
BspMAI	CTGCAG	2 cut(s)	26, 192
BspMI	ACCTGC	2 cut(s)	392, 713
BspPI	GGATC	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	531, 664
BssHII	GCGCGC	1 cut(s)	52
BssMI	GATC	2 cut(s)	175, 603
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	652, 704
BstAFI	CTTAAG	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	54, 410, 432
BstDEI	CTNAG	2 cut(s)	114, 325
BstF5I	GGATG	2 cut(s)	124, 325
BstFNI	CGCG	4 cut(s)	16, 52, 54, 675
BstHHI	GCGC	3 cut(s)	16, 54, 56
BstKTI	GATC	2 cut(s)	178, 606
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	2 cut(s)	175, 603
BstMCI	CGRYCG	1 cut(s)	670
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 431
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	379, 531, 664
BstSFI	CTRYAG	2 cut(s)	22, 188
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	4 cut(s)	16, 52, 54, 675
BstV1I	GCAGC	2 cut(s)	174, 242
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	282, 669
BtgZI	GCGATG	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	124, 325
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	2 cut(s)	392, 713
Cac8I	GCNNGC	3 cut(s)	54, 410, 432
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	3 cut(s)	16, 54, 56
Cfr13I	GGNCC	4 cut(s)	101, 236, 280, 506
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	409, 601
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	114, 325
DpnI	GATC	2 cut(s)	177, 605
DpnII	GATC	2 cut(s)	175, 603
DrdI	GACNNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	504
EaeI	YGGCCR	1 cut(s)	667
EagI	CGGCCG	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	652, 704
EarI	CTCTTC	2 cut(s)	652, 704
EclXI	CGGCCG	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	565
Eco47I	GGWCC	3 cut(s)	101, 236, 506
Eco52I	CGGCCG	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	200, 417
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	3 cut(s)	83, 209, 416
EcoRII	CCWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	540
FaeI	CATG	2 cut(s)	412, 604
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	3 cut(s)	61, 222, 492
FatI	CATG	2 cut(s)	408, 600
FauI	CCCGC	2 cut(s)	9, 618
FauNDI	CATATG	1 cut(s)	251
Fnu4HI	GCNGC	8 cut(s)	7, 188, 231, 300, 528, 633, 670, 673
FokI	GGATG	2 cut(s)	131, 332
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	8 cut(s)	7, 188, 231, 300, 528, 633, 670, 673
FspBI	CTAG	2 cut(s)	158, 354
GlaI	GCGC	3 cut(s)	15, 53, 55
GluI	GCNGC	8 cut(s)	7, 188, 231, 300, 528, 633, 670, 673
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	282, 669
HapII	CCGG	4 cut(s)	533, 557, 579, 666
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	3 cut(s)	16, 54, 56
Hin1II	CATG	2 cut(s)	412, 604
Hin6I	GCGC	3 cut(s)	14, 52, 54
HinP1I	GCGC	3 cut(s)	14, 52, 54
HinfI	GANTC	2 cut(s)	474, 677
HpaII	CCGG	4 cut(s)	533, 557, 579, 666
HphI	GGTGA	2 cut(s)	676, 694
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	3 cut(s)	180, 565, 694
Hpy188III	TCNNGA	1 cut(s)	601
Hpy8I	GTNNAC	1 cut(s)	624
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	163, 497
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	24, 190, 230, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 431
HpyF3I	CTNAG	2 cut(s)	114, 325
Hsp92II	CATG	2 cut(s)	412, 604
HspAI	GCGC	3 cut(s)	14, 52, 54
Kzo9I	GATC	2 cut(s)	175, 603
LmnI	GCTCC	2 cut(s)	59, 535
Lsp1109I	GCAGC	2 cut(s)	174, 242
LweI	GCATC	2 cut(s)	71, 619
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	2 cut(s)	158, 354
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	177, 605
MboI	GATC	2 cut(s)	175, 603
MboII	GAAGA	9 cut(s)	193, 218, 429, 432, 455, 479, 514, 639, 691
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	334, 540
MluCI	AATT	4 cut(s)	83, 209, 340, 416
MlyI	GAGTC	2 cut(s)	468, 671
MmeI	TCCRAC	2 cut(s)	588, 717
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	4 cut(s)	533, 557, 579, 666
MspR9I	CCNGG	3 cut(s)	381, 533, 666
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	4 cut(s)	16, 52, 54, 675
MwoI	GCNNNNNNNGC	2 cut(s)	371, 431
NciI	CCSGG	2 cut(s)	533, 666
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	2 cut(s)	175, 603
NlaIII	CATG	2 cut(s)	412, 604
NlaIV	GGNNCC	5 cut(s)	238, 281, 331, 508, 537
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	412
PaeI	GCATGC	1 cut(s)	412
PagI	TCATGA	1 cut(s)	600
PaqCI	CACCTGC	2 cut(s)	392, 713
PauI	GCGCGC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	83
PkrI	GCNGC	8 cut(s)	8, 189, 232, 301, 529, 634, 671, 674
PleI	GAGTC	2 cut(s)	468, 671
PpsI	GAGTC	2 cut(s)	468, 671
PpuMI	RGGWCCY	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	5 cut(s)	238, 281, 331, 508, 537
PspPI	GGNCC	4 cut(s)	101, 236, 280, 506
PspPPI	RGGWCCY	1 cut(s)	506
PstI	CTGCAG	2 cut(s)	26, 192
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	175
PteI	GCGCGC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	8 cut(s)	7, 188, 231, 300, 528, 633, 670, 673
Sau3AI	GATC	2 cut(s)	175, 603
Sau96I	GGNCC	4 cut(s)	101, 236, 280, 506
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	2 cut(s)	468, 671
ScrFI	CCNGG	3 cut(s)	381, 533, 666
SduI	GDGCHC	2 cut(s)	334, 540
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	2 cut(s)	71, 619
SfcI	CTRYAG	2 cut(s)	22, 188
SinI	GGWCC	3 cut(s)	101, 236, 506
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	412
Sse9I	AATT	4 cut(s)	83, 209, 340, 416
SsiI	CCGC	7 cut(s)	16, 299, 528, 611, 633, 670, 673
SspMI	CTAG	2 cut(s)	158, 354
StyD4I	CCNGG	3 cut(s)	379, 531, 664
TaaI	ACNGT	1 cut(s)	198
TasI	AATT	4 cut(s)	83, 209, 340, 416
TatI	WGTACW	1 cut(s)	218
TauI	GCSGC	5 cut(s)	302, 530, 635, 672, 675
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	6, 187, 230
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	96, 177, 303
TspRI	CASTG	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	101, 236, 506
XapI	RAATTY	3 cut(s)	83, 209, 416
XceI	RCATGY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	2 cut(s)	158, 354
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.