Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Reverse (-)

33965978 .. 33966598

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAGTCCAGGAGTCACAGGATGGGAAGCCGAGCTCCGACTCCATCTACAGGCTATTCTTGCCGACCATGCGCACCCGCAACACCTCCCTGAACCTTCTGGTCAAGTTCCTCACAACTTCTGACGAGGCCGAAGTTGAGGCTCGCCTCTTCGAGAAAGACGCCTTCGCTGCCACCAGTATGATTGTCGGAACGATCTACTCCGAGGAGATCAGCGAGCGCATAGTGGAGGTCCTCAAGGCTAAGAATACCGGCGCTTCTGCTGCTGGAAACGGCGCCCTGTTGTTGCCGGACGTTGGCAGGCTCAAGCCCATCGTGGACCTTATTATCAAGGACCTCAGCAGTCCCTTCTCTCCCTTTAGAGGCTTCGGCACCTTCTCCACCGACGAGGCCAAAGCTCTGGCTCCTCTCATCGAGCAAGAGGCCTTCGTCGCCGCCTGGATCAAGATCCGTCAGATCTACATCCATGAGGTCTGCAAGCGCATGGCAGAGATCAAATACAAGGACGCCGCTGCTTCTGCTGCTGGAAACGTCGCGTCGGAGACCGCCGCCGGTGGTGTGCCTGAGGCAATTGAAAGTCAGCTAAAATGCATGGAATTAGCAGAATCCATGGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

207

Amino Acids

22.42

Weight (kDa)

4.85

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	74
AccB1I	GGYRCC	2 cut(s)	275, 371
AccII	CGCG	1 cut(s)	536
AciI	CCGC	5 cut(s)	79, 435, 510, 546, 549
AclWI	GGATC	2 cut(s)	442, 449
AcyI	GRCGYC	3 cut(s)	162, 276, 507
AfiI	CCNNNNNNNGG	3 cut(s)	51, 296, 362
AgsI	TTSAA	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	9, 437
AluBI	AGCT	3 cut(s)	36, 398, 583
AluI	AGCT	3 cut(s)	36, 398, 583
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	2 cut(s)	442, 449
AoxI	GGCC	3 cut(s)	129, 390, 423
ApeKI	GCWGC	4 cut(s)	170, 263, 512, 521
AspLEI	GCGC	5 cut(s)	75, 222, 257, 278, 483
AspS9I	GGNCC	3 cut(s)	232, 319, 334
AvaII	GGWCC	3 cut(s)	232, 319, 334
AxyI	CCTNAGG	1 cut(s)	564
BanI	GGYRCC	2 cut(s)	275, 371
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	157, 250, 499, 508
BccI	CCATC	3 cut(s)	17, 53, 320
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	2 cut(s)	11, 439
BcoDI	GTCTC	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	2 cut(s)	258, 279
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
BlsI	GCNGC	7 cut(s)	172, 265, 436, 511, 514, 523, 550
Bme1390I	CCNGG	2 cut(s)	11, 439
Bme18I	GGWCC	3 cut(s)	232, 319, 334
BmgT120I	GGNCC	3 cut(s)	232, 319, 334
BmiI	GGNNCC	3 cut(s)	277, 373, 405
BmrFI	CCNGG	2 cut(s)	11, 439
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	221, 290
BsaBI	GATNNNNATC	2 cut(s)	446, 461
BsaHI	GRCGYC	3 cut(s)	162, 276, 507
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	204, 609
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 296, 362
Bse118I	RCCGGY	2 cut(s)	251, 551
Bse1I	ACTGG	1 cut(s)	177
Bse21I	CCTNAGG	1 cut(s)	564
Bse8I	GATNNNNATC	2 cut(s)	446, 461
BseBI	CCWGG	2 cut(s)	11, 439
BseDI	CCNNGG	2 cut(s)	204, 609
BseGI	GGATG	2 cut(s)	28, 462
BseJI	GATNNNNATC	2 cut(s)	446, 461
BseLI	CCNNNNNNNGG	3 cut(s)	51, 296, 362
BseMII	CTCAG	2 cut(s)	352, 555
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	221, 396
BseXI	GCAGC	4 cut(s)	157, 250, 499, 508
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	3 cut(s)	131, 392, 425
BshNI	GGYRCC	2 cut(s)	275, 371
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	252, 290, 552
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	51, 296, 362
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	131, 392, 425
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	5 cut(s)	79, 435, 510, 546, 549
BspANI	GGCC	3 cut(s)	131, 392, 425
BspCNI	CTCAG	2 cut(s)	351, 556
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	3 cut(s)	277, 373, 405
BspPI	GGATC	2 cut(s)	442, 449
BspT107I	GGYRCC	2 cut(s)	275, 371
BspTNI	GGTCTC	1 cut(s)	536
BsrFI	RCCGGY	2 cut(s)	251, 551
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	2 cut(s)	251, 551
BssECI	CCNNGG	2 cut(s)	204, 609
BssMI	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
BssNI	GRCGYC	3 cut(s)	162, 276, 507
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	11, 439
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	3 cut(s)	162, 276, 507
BstC8I	GCNNGC	4 cut(s)	145, 218, 302, 479
BstDEI	CTNAG	3 cut(s)	243, 338, 564
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	28, 462
BstFNI	CGCG	1 cut(s)	536
BstH2I	RGCGCY	2 cut(s)	258, 279
BstHHI	GCGC	5 cut(s)	75, 222, 257, 278, 483
BstKTI	GATC	6 cut(s)	198, 213, 444, 450, 459, 495
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 70, 170, 263, 431, 518, 521
BstNI	CCWGG	2 cut(s)	11, 439
BstSCI	CCNGG	2 cut(s)	9, 437
BstSFI	CTRYAG	1 cut(s)	49
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	4 cut(s)	157, 250, 499, 508
BstX2I	RGATCY	2 cut(s)	447, 456
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	2 cut(s)	447, 456
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	131, 392, 425
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	28, 462
Cac8I	GCNNGC	4 cut(s)	145, 218, 302, 479
CfoI	GCGC	5 cut(s)	75, 222, 257, 278, 483
Cfr10I	RCCGGY	2 cut(s)	251, 551
Cfr13I	GGNCC	3 cut(s)	232, 319, 334
CseI	GACGC	3 cut(s)	170, 515, 525
CviAII	CATG	5 cut(s)	70, 467, 484, 592, 610
DdeI	CTNAG	3 cut(s)	243, 338, 564
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	6 cut(s)	197, 212, 443, 449, 458, 494
DpnII	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	609
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	3 cut(s)	232, 319, 334
Eco53kI	GAGCTC	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	564
EcoICRI	GAGCTC	1 cut(s)	36
EcoO109I	RGGNCCY	2 cut(s)	232, 334
EcoRII	CCWGG	2 cut(s)	9, 437
EcoT14I	CCWWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	38
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	5 cut(s)	73, 470, 487, 595, 613
FaiI	YATR	7 cut(s)	71, 182, 224, 468, 485, 593, 611
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	5 cut(s)	69, 466, 483, 591, 609
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
FokI	GGATG	2 cut(s)	35, 449
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
FspAI	RTGCGCAY	1 cut(s)	74
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	5 cut(s)	74, 221, 256, 277, 482
GluI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
HaeII	RGCGCY	2 cut(s)	258, 279
HaeIII	GGCC	3 cut(s)	131, 392, 425
HapII	CCGG	3 cut(s)	252, 290, 552
HgaI	GACGC	3 cut(s)	170, 515, 525
HhaI	GCGC	5 cut(s)	75, 222, 257, 278, 483
Hin1I	GRCGYC	3 cut(s)	162, 276, 507
Hin1II	CATG	5 cut(s)	73, 470, 487, 595, 613
Hin6I	GCGC	5 cut(s)	73, 220, 255, 276, 481
HinP1I	GCGC	5 cut(s)	73, 220, 255, 276, 481
HinfI	GANTC	3 cut(s)	14, 41, 605
HpaII	CCGG	3 cut(s)	252, 290, 552
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	6 cut(s)	40, 124, 191, 205, 456, 541
Hpy188III	TCNNGA	2 cut(s)	154, 445
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	4 cut(s)	389, 434, 536, 541
HpyAV	CCTTC	5 cut(s)	107, 175, 358, 385, 436
HpyCH4IV	ACGT	2 cut(s)	294, 531
HpyCH4V	TGCA	2 cut(s)	477, 591
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 70, 170, 263, 431, 518, 521
HpyF3I	CTNAG	3 cut(s)	243, 338, 564
HpySE526I	ACGT	2 cut(s)	294, 531
Hsp92I	GRCGYC	3 cut(s)	162, 276, 507
Hsp92II	CATG	5 cut(s)	73, 470, 487, 595, 613
HspAI	GCGC	5 cut(s)	73, 220, 255, 276, 481
KasI	GGCGCC	1 cut(s)	275
Kzo9I	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
LmnI	GCTCC	2 cut(s)	41, 409
Lsp1109I	GCAGC	4 cut(s)	157, 250, 499, 508
MaeII	ACGT	2 cut(s)	294, 531
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	6 cut(s)	197, 212, 443, 449, 458, 494
MboI	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	2 cut(s)	447, 456
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	570, 596
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	23, 35
MmeI	TCCRAC	3 cut(s)	63, 169, 519
Mph1103I	ATGCAT	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	3 cut(s)	252, 290, 552
MspR9I	CCNGG	2 cut(s)	11, 439
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	2 cut(s)	11, 439
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	7 cut(s)	61, 70, 170, 263, 431, 518, 521
NarI	GGCGCC	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
NlaIII	CATG	5 cut(s)	73, 470, 487, 595, 613
NlaIV	GGNNCC	3 cut(s)	277, 373, 405
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	593
PceI	AGGCCT	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	7 cut(s)	172, 265, 436, 511, 514, 523, 550
PleI	GAGTC	2 cut(s)	22, 35
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	2 cut(s)	22, 35
PpuMI	RGGWCCY	2 cut(s)	232, 334
Psp124BI	GAGCTC	1 cut(s)	38
Psp5II	RGGWCCY	2 cut(s)	232, 334
Psp6I	CCWGG	2 cut(s)	9, 437
PspGI	CCWGG	2 cut(s)	9, 437
PspN4I	GGNNCC	3 cut(s)	277, 373, 405
PspPI	GGNCC	3 cut(s)	232, 319, 334
PspPPI	RGGWCCY	2 cut(s)	232, 334
PsuI	RGATCY	2 cut(s)	447, 456
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
Sau3AI	GATC	6 cut(s)	195, 210, 441, 447, 456, 492
Sau96I	GGNCC	3 cut(s)	232, 319, 334
SchI	GAGTC	2 cut(s)	23, 35
ScrFI	CCNGG	2 cut(s)	11, 439
SduI	GDGCHC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	49
SfoI	GGCGCC	1 cut(s)	277
SgrAI	CRCCGGYG	1 cut(s)	551
SinI	GGWCC	3 cut(s)	232, 319, 334
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	236, 305
SmoI	CTYRAG	2 cut(s)	236, 305
Sse9I	AATT	2 cut(s)	570, 596
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	5 cut(s)	79, 435, 510, 546, 549
SspDI	GGCGCC	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	9, 437
StyI	CCWWGG	1 cut(s)	609
TaiI	ACGT	2 cut(s)	297, 534
TaqI	TCGA	2 cut(s)	153, 414
TasI	AATT	2 cut(s)	570, 596
TauI	GCSGC	3 cut(s)	437, 512, 551
TfiI	GAWTC	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	4 cut(s)	170, 263, 512, 521
Tsp45I	GTSAC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	440
VpaK11BI	GGWCC	3 cut(s)	232, 319, 334
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.