Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Forward (+)

30075627 .. 30077154

Gene Structure 1528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG150400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCTCCGACTCCATCATCCACAGCCTATTCTTGCCGAGCATGGTCTTCCGCAACACCGCCGTGGACCTTCTGTTCGATTTCCTCACCACTTACGACGAGGCCGAAGTCGAGGCCGAAGTCAAGGCTCGCCTCTTCGAGGAAGACGCCTTCGCCGTCTCCAGATCTGTTATCGGAACGATCTACTCCGACGAGATCAGCGATCGCGTGCTGGAGTTCCTCAAGGCTAAGAACACCGACGCTTCTGCTGCTGGAAAGGGCGCCCTGTTGTTGCCGGACGTTGGCGTGCGCAAGCCCTTCGTGGGCATTATTATCAAGAACCTCAGCAGTCCCTCCTCTCCCTGGAGGCACTACGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCGAGAGGCCTTCTTCGCCGCCAGGGAGAAGATCCGCGAGATCTACATCGAGGAGGTCTGCAAGCGCATGTTCGAGATCAAACACAAGAACGCCGCTGCTGGAAACGTCGCGTCGGAGACCGCCGCCGGTGGTGTGCCTGAGGCAATTGAAAGTCAGCTAAAATCCATGGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

202

Amino Acids

22.42

Weight (kDa)

4.96

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	106 - 154	4.7e-06	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	320
AccB1I	GGYRCC	2 cut(s)	290, 386
AccII	CGCG	3 cut(s)	237, 468, 542
AciI	CCGC	7 cut(s)	82, 90, 450, 466, 525, 552, 555
AclWI	GGATC	2 cut(s)	30, 457
AcyI	GRCGYC	2 cut(s)	177, 291
AfiI	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
AgsI	TTSAA	1 cut(s)	581
AjnI	CCWGG	4 cut(s)	9, 371, 414, 452
AleI	CACNNNNGTG	1 cut(s)	92
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	2 cut(s)	36, 589
AluI	AGCT	2 cut(s)	36, 589
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	193, 542
AlwI	GGATC	2 cut(s)	30, 457
AoxI	GGCC	4 cut(s)	132, 144, 405, 438
ApeKI	GCWGC	2 cut(s)	278, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AsiSI	GCGATCGC	1 cut(s)	235
AspLEI	GCGC	3 cut(s)	293, 321, 498
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	570
BanI	GGYRCC	2 cut(s)	290, 386
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	70, 180
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	265, 514
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	3 cut(s)	77, 170, 400
BcgI	CGANNNNNNTGC	4 cut(s)	257, 291, 310, 344
BciT130I	CCWGG	4 cut(s)	11, 373, 416, 454
BcoDI	GTCTC	2 cut(s)	193, 542
BfoI	RGCGCY	1 cut(s)	294
BglII	AGATCT	2 cut(s)	194, 471
BisI	GCNGC	5 cut(s)	279, 450, 525, 528, 555
BlsI	GCNGC	5 cut(s)	280, 451, 526, 529, 556
Bme1390I	CCNGG	4 cut(s)	11, 373, 416, 454
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	3 cut(s)	292, 388, 420
BmrFI	CCNGG	4 cut(s)	11, 373, 416, 454
BpiI	GAAGAC	2 cut(s)	70, 180
BpmI	CTGGAG	3 cut(s)	175, 263, 394
Bpu10I	CCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	476
BsaHI	GRCGYC	2 cut(s)	177, 291
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	5 cut(s)	93, 371, 414, 453, 597
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
Bse118I	RCCGGY	1 cut(s)	557
Bse21I	CCTNAGG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	4 cut(s)	11, 373, 416, 454
BseDI	CCNNGG	5 cut(s)	93, 371, 414, 453, 597
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
BseMII	CTCAG	2 cut(s)	367, 561
BseRI	GAGGAG	2 cut(s)	355, 497
BseXI	GCAGC	2 cut(s)	265, 514
Bsh1236I	CGCG	3 cut(s)	237, 468, 542
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	4 cut(s)	134, 146, 407, 440
BshNI	GGYRCC	2 cut(s)	290, 386
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	305, 558
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
BsmAI	GTCTC	2 cut(s)	193, 542
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	4 cut(s)	134, 146, 407, 440
Bso31I	GGTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	7 cut(s)	82, 90, 450, 466, 525, 552, 555
BspANI	GGCC	4 cut(s)	134, 146, 407, 440
BspCNI	CTCAG	2 cut(s)	366, 562
BspFNI	CGCG	3 cut(s)	237, 468, 542
BspLI	GGNNCC	3 cut(s)	292, 388, 420
BspPI	GGATC	2 cut(s)	30, 457
BspT107I	GGYRCC	2 cut(s)	290, 386
BspTNI	GGTCTC	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	5 cut(s)	93, 371, 414, 453, 597
BssMI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
BssNI	GRCGYC	2 cut(s)	177, 291
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	4 cut(s)	11, 373, 416, 454
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	2 cut(s)	177, 291
BstC8I	GCNNGC	5 cut(s)	160, 239, 317, 323, 494
BstDEI	CTNAG	3 cut(s)	258, 353, 570
BstDSI	CCRYGG	2 cut(s)	93, 597
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	3 cut(s)	237, 468, 542
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	293, 321, 498
BstKTI	GATC	8 cut(s)	25, 197, 213, 228, 235, 465, 474, 510
BstMAI	GTCTC	2 cut(s)	193, 542
BstMBI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 446
BstNI	CCWGG	4 cut(s)	11, 373, 416, 454
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	4 cut(s)	9, 371, 414, 452
BstUI	CGCG	3 cut(s)	237, 468, 542
BstV1I	GCAGC	2 cut(s)	265, 514
BstV2I	GAAGAC	2 cut(s)	70, 180
BstX2I	RGATCY	3 cut(s)	194, 462, 471
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	3 cut(s)	194, 462, 471
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	4 cut(s)	134, 146, 407, 440
BtgI	CCRYGG	2 cut(s)	93, 597
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	5 cut(s)	160, 239, 317, 323, 494
CfoI	GCGC	3 cut(s)	293, 321, 498
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	3 cut(s)	185, 278, 531
CviAII	CATG	3 cut(s)	73, 499, 598
DdeI	CTNAG	3 cut(s)	258, 353, 570
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	8 cut(s)	24, 196, 212, 227, 234, 464, 473, 509
DpnII	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoRII	CCWGG	4 cut(s)	9, 371, 414, 452
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	38
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	597
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	76, 502, 601
FaiI	YATR	3 cut(s)	74, 500, 599
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	3 cut(s)	72, 498, 597
Fnu4HI	GCNGC	5 cut(s)	279, 450, 525, 528, 555
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	279, 450, 525, 528, 555
FspI	TGCGCA	1 cut(s)	320
GlaI	GCGC	3 cut(s)	292, 320, 497
GluI	GCNGC	5 cut(s)	279, 450, 525, 528, 555
GsuI	CTGGAG	3 cut(s)	175, 263, 394
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	4 cut(s)	134, 146, 407, 440
HapII	CCGG	2 cut(s)	305, 558
HgaI	GACGC	3 cut(s)	185, 278, 531
HhaI	GCGC	3 cut(s)	293, 321, 498
Hin1I	GRCGYC	2 cut(s)	177, 291
Hin1II	CATG	3 cut(s)	76, 502, 601
Hin6I	GCGC	3 cut(s)	291, 319, 496
HinP1I	GCGC	3 cut(s)	291, 319, 496
HinfI	GANTC	2 cut(s)	14, 41
HpaII	CCGG	2 cut(s)	305, 558
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	27, 40, 206, 220, 547
Hpy188III	TCNNGA	3 cut(s)	192, 346, 505
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	6 cut(s)	131, 224, 272, 404, 542, 547
HpyAV	CCTTC	6 cut(s)	110, 190, 337, 400, 433, 451
HpyCH4IV	ACGT	2 cut(s)	309, 537
HpyCH4V	TGCA	1 cut(s)	492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 446
HpyF3I	CTNAG	3 cut(s)	258, 353, 570
HpySE526I	ACGT	2 cut(s)	309, 537
Hsp92I	GRCGYC	2 cut(s)	177, 291
Hsp92II	CATG	3 cut(s)	76, 502, 601
HspAI	GCGC	3 cut(s)	291, 319, 496
KasI	GGCGCC	1 cut(s)	290
Kzo9I	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
LmnI	GCTCC	2 cut(s)	41, 424
Lsp1109I	GCAGC	2 cut(s)	265, 514
MaeII	ACGT	2 cut(s)	309, 537
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	8 cut(s)	24, 196, 212, 227, 234, 464, 473, 509
MboI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
MboII	GAAGA	5 cut(s)	70, 157, 185, 436, 472
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	3 cut(s)	194, 462, 471
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	576
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	23, 35
MmeI	TCCRAC	3 cut(s)	63, 243, 525
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	305, 558
MspR9I	CCNGG	4 cut(s)	11, 373, 416, 454
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	4 cut(s)	11, 373, 416, 454
MvnI	CGCG	3 cut(s)	237, 468, 542
MwoI	GCNNNNNNNGC	2 cut(s)	278, 446
NarI	GGCGCC	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
NlaIII	CATG	3 cut(s)	76, 502, 601
NlaIV	GGNNCC	3 cut(s)	292, 388, 420
NmeAIII	GCCGAG	2 cut(s)	57, 93
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	320
NspI	RCATGY	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 183, 228
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	5 cut(s)	280, 451, 526, 529, 556
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	2 cut(s)	22, 35
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	2 cut(s)	22, 35
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	4 cut(s)	9, 371, 414, 452
PspGI	CCWGG	4 cut(s)	9, 371, 414, 452
PspN4I	GGNNCC	3 cut(s)	292, 388, 420
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	3 cut(s)	194, 462, 471
PvuI	CGATCG	1 cut(s)	235
RgaI	GCGATCGC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	5 cut(s)	279, 450, 525, 528, 555
Sau3AI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	23, 35
ScrFI	CCNGG	4 cut(s)	11, 373, 416, 454
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	38, 102, 312, 354, 392, 489, 540, 591
SfaAI	GCGATCGC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	292
SgfI	GCGATCGC	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	576
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	7 cut(s)	82, 90, 450, 466, 525, 552, 555
SspDI	GGCGCC	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	4 cut(s)	9, 371, 414, 452
StyI	CCWWGG	1 cut(s)	597
TaiI	ACGT	2 cut(s)	312, 540
TaqI	TCGA	6 cut(s)	108, 141, 168, 429, 480, 504
TasI	AATT	1 cut(s)	576
TauI	GCSGC	3 cut(s)	452, 527, 557
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	278, 527
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	97
XagI	CCTNNNNNAGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.