Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Forward (+)

28877023 .. 28877541

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCTCTGACTCCACCTACAGCCCATTCTTGCCGACCATGGGCGTCCGCAACACCGCCGAGAACCTTCTGGTCAAGTTCCTCACCACTTCCGAAGTCGAGGCTCGCCTCATCGAGAAAGACTCCTTCGCCGCCACCAGAATGATGATCCGAACGATCTACTCCGACGAGATCAGCGATCGCATGGTGGAGGTCCTCAAGGCTAAGAACACCGGCGCTTCTGCTGCTGGAAAGGGCACCCTGTTGTTGCAGGATGATGGCAGGCCTAAGCCCTTCGTGGGCCTTATTATCAAGAATCTCAGCAGTCCCTCTTCTCCCTTGACACACTTCGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCAAGAAGCCTTCCTCGCCGCCAGGATGAAGATCCGTAAGATCTACAACCATGAGGTCTGCAAGCGCGTGTTGGAGATCAAACACAAGAACGCCGTTGCTTCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

172

Amino Acids

19.02

Weight (kDa)

8.99

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	266, 362
AccII	CGCG	1 cut(s)	474
AciI	CCGC	4 cut(s)	79, 87, 162, 426
AclWI	GGATC	3 cut(s)	30, 172, 433
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	71, 308
AjnI	CCWGG	3 cut(s)	9, 390, 428
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	3 cut(s)	30, 172, 433
AoxI	GGCC	3 cut(s)	293, 310, 381
ApeKI	GCWGC	2 cut(s)	254, 512
AsiSI	GCGATCGC	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	248, 474
AspS9I	GGNCC	2 cut(s)	223, 310
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	2 cut(s)	266, 362
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	241, 499
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	3 cut(s)	11, 392, 430
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	249
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	4 cut(s)	162, 255, 426, 513
BlsI	GCNGC	4 cut(s)	163, 256, 427, 514
Bme1390I	CCNGG	3 cut(s)	11, 392, 430
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	223, 310
BmiI	GGNNCC	3 cut(s)	268, 364, 396
BmrFI	CCNGG	3 cut(s)	11, 392, 430
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	69, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 308
Bse118I	RCCGGY	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	3 cut(s)	11, 392, 430
BseDI	CCNNGG	2 cut(s)	69, 390
BseGI	GGATG	2 cut(s)	289, 438
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	71, 308
BseMII	CTCAG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	241, 499
Bsh1236I	CGCG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	295, 312, 383
BshNI	GGYRCC	2 cut(s)	266, 362
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	71, 308
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	295, 312, 383
Bsp1286I	GDGCHC	2 cut(s)	38, 269
Bsp143I	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	79, 87, 162, 426
BspANI	GGCC	3 cut(s)	295, 312, 383
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	268, 364, 396
BspPI	GGATC	3 cut(s)	30, 172, 433
BspT107I	GGYRCC	2 cut(s)	266, 362
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	69, 390
BssMI	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	11, 392, 430
Bst6I	CTCTTC	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	136, 293, 470
BstDEI	CTNAG	3 cut(s)	234, 297, 329
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	289, 438
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	248, 474
BstKTI	GATC	8 cut(s)	25, 180, 189, 204, 211, 441, 450, 486
BstMBI	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 422, 512
BstNI	CCWGG	3 cut(s)	11, 392, 430
BstSCI	CCNGG	3 cut(s)	9, 390, 428
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	241, 499
BstX2I	RGATCY	2 cut(s)	438, 447
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	2 cut(s)	438, 447
BsuRI	GGCC	3 cut(s)	295, 312, 383
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	289, 438
Cac8I	GCNNGC	3 cut(s)	136, 293, 470
CfoI	GCGC	2 cut(s)	248, 474
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	223, 310
CseI	GACGC	1 cut(s)	64
CviAII	CATG	3 cut(s)	70, 214, 458
DdeI	CTNAG	3 cut(s)	234, 297, 329
DpnI	GATC	8 cut(s)	24, 179, 188, 203, 210, 440, 449, 485
DpnII	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	9, 390, 428
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	73, 217, 461
FaiI	YATR	3 cut(s)	71, 215, 459
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	69, 213, 457
Fnu4HI	GCNGC	4 cut(s)	162, 255, 426, 513
FokI	GGATG	2 cut(s)	296, 445
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	162, 255, 426, 513
GlaI	GCGC	2 cut(s)	247, 473
GluI	GCNGC	4 cut(s)	162, 255, 426, 513
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	295, 312, 383
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	248, 474
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	73, 217, 461
Hin6I	GCGC	2 cut(s)	246, 472
HinP1I	GCGC	2 cut(s)	246, 472
HinfI	GANTC	4 cut(s)	14, 41, 152, 325
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	5 cut(s)	27, 40, 124, 182, 196
Hpy188III	TCNNGA	2 cut(s)	145, 322
Hpy99I	CGWCG	2 cut(s)	200, 380
HpyAV	CCTTC	6 cut(s)	107, 166, 313, 376, 409, 427
HpyCH4V	TGCA	2 cut(s)	280, 468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 422, 512
HpyF3I	CTNAG	3 cut(s)	234, 297, 329
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	73, 217, 461
HspAI	GCGC	2 cut(s)	246, 472
Kzo9I	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	241, 499
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	8 cut(s)	24, 179, 188, 203, 210, 440, 449, 485
MboI	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
MboII	GAAGA	2 cut(s)	333, 448
MflI	RGATCY	2 cut(s)	438, 447
MhlI	GDGCHC	2 cut(s)	38, 269
MlyI	GAGTC	3 cut(s)	23, 35, 146
MmeI	TCCRAC	2 cut(s)	219, 459
MnlI	CCTC	9 cut(s)	122, 124, 149, 214, 236, 349, 373, 431, 454
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	3 cut(s)	11, 392, 430
MvaI	CCWGG	3 cut(s)	11, 392, 430
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	254, 422, 512
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
NlaIII	CATG	3 cut(s)	73, 217, 461
NlaIV	GGNNCC	3 cut(s)	268, 364, 396
NmeAIII	GCCGAG	2 cut(s)	57, 115
NmuCI	GTSAC	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	4 cut(s)	163, 256, 427, 514
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	3 cut(s)	22, 35, 146
PpsI	GAGTC	3 cut(s)	22, 35, 146
PpuMI	RGGWCCY	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	9, 390, 428
PspGI	CCWGG	3 cut(s)	9, 390, 428
PspN4I	GGNNCC	3 cut(s)	268, 364, 396
PspPI	GGNCC	2 cut(s)	223, 310
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	438, 447
PvuI	CGATCG	1 cut(s)	211
RgaI	GCGATCGC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	4 cut(s)	162, 255, 426, 513
Sau3AI	GATC	8 cut(s)	22, 177, 186, 201, 208, 438, 447, 483
Sau96I	GGNCC	2 cut(s)	223, 310
SchI	GAGTC	3 cut(s)	23, 35, 146
ScrFI	CCNGG	3 cut(s)	11, 392, 430
SduI	GDGCHC	2 cut(s)	38, 269
SetI	ASST	6 cut(s)	38, 50, 99, 225, 368, 465
SfaAI	GCGATCGC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	49
SgfI	GCGATCGC	1 cut(s)	211
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	4 cut(s)	79, 87, 162, 426
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	9, 390, 428
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	3 cut(s)	129, 144, 405
TauI	GCSGC	2 cut(s)	164, 428
TfiI	GAWTC	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	254, 512
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	391, 449
TspGWI	ACGGA	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.