Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Forward (+)

47231634 .. 47232230

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCTCCGACTCCATCATCCACAGCCTATTCTTGCCGAGCATGGTCTTCCGCAACACCGCCGTGGACCTTCTGTTCAATTTCCTCACCACTTACGACGAGGCCGAAGTCGAGGCCGAAGTCAAGGCTCGCCTCTTCGAGGAAGACGCCTTCGCCGTCTCCAGATCGATTATCGGAGCGATCTACTCCGACGAGATCAGCGATCGCGTGCTGGAGTTCCTCAAGGCTAAGAACACCGACGCTTCTGCTGCTGGAAAGGGCACCCTGTTGTTGCCGGCCGTTGGCGTGCGCAAGCCCTTCGTGGGCATTATTATCAAGAACCTCAGCAGTCCCTCCTCTCCTTGGAGGCACTACGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCGAGAGGCCTTCTTCGCCGCCAGAGAGAAGATCCGTGAGATCTACATCGAGGAGGTCTGCCAGCGCATGTTCGAGATCAAACACAAGAACGCCGCTGCTTCTGCTGCTGGAAACGTCGCGTCGGAGACCGCCGCCGGTGGTGTGCTTGAGGCAATTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

199

Amino Acids

21.78

Weight (kDa)

5.02

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	102 - 154	4e-06	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	320
AccB1I	GGYRCC	2 cut(s)	290, 386
AccII	CGCG	2 cut(s)	237, 551
AciI	CCGC	6 cut(s)	82, 90, 450, 525, 561, 564
AclWI	GGATC	2 cut(s)	30, 457
AcoI	YGGCCR	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
AgsI	TTSAA	2 cut(s)	109, 590
AjnI	CCWGG	2 cut(s)	9, 414
AleI	CACNNNNGTG	1 cut(s)	92
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	193, 551
AlwI	GGATC	2 cut(s)	30, 457
AoxI	GGCC	5 cut(s)	132, 144, 306, 405, 438
ApeKI	GCWGC	3 cut(s)	278, 527, 536
AsiSI	GCGATCGC	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	321, 498
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	293
BanI	GGYRCC	2 cut(s)	290, 386
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	70, 180
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	265, 514, 523
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	4 cut(s)	77, 170, 293, 400
BcgI	CGANNNNNNTGC	4 cut(s)	257, 291, 310, 344
BciT130I	CCWGG	2 cut(s)	11, 416
BcoDI	GTCTC	2 cut(s)	193, 551
BglII	AGATCT	1 cut(s)	471
BisI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
BlsI	GCNGC	6 cut(s)	280, 451, 526, 529, 538, 565
Bme1390I	CCNGG	2 cut(s)	11, 416
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	3 cut(s)	292, 388, 420
BmrFI	CCNGG	2 cut(s)	11, 416
BpiI	GAAGAC	2 cut(s)	70, 180
BpmI	CTGGAG	2 cut(s)	175, 263
Bpu10I	CCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	93, 371, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
Bse118I	RCCGGY	2 cut(s)	304, 566
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	11, 416
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	93, 371, 414
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
BseMII	CTCAG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	355, 497
BseSI	GKGCMC	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	265, 514, 523
Bsh1236I	CGCG	2 cut(s)	237, 551
Bsh1285I	CGRYCG	2 cut(s)	235, 309
BshFI	GGCC	5 cut(s)	134, 146, 308, 407, 440
BshNI	GGYRCC	2 cut(s)	290, 386
BshVI	ATCGAT	1 cut(s)	197
BsiEI	CGRYCG	2 cut(s)	235, 309
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	305, 567
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	4 cut(s)	169, 311, 332, 372
BsmAI	GTCTC	2 cut(s)	193, 551
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	5 cut(s)	134, 146, 308, 407, 440
Bso31I	GGTCTC	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	38, 293
Bsp143I	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
BspACI	CCGC	6 cut(s)	82, 90, 450, 525, 561, 564
BspANI	GGCC	5 cut(s)	134, 146, 308, 407, 440
BspCNI	CTCAG	1 cut(s)	366
BspDI	ATCGAT	1 cut(s)	197
BspFNI	CGCG	2 cut(s)	237, 551
BspLI	GGNNCC	3 cut(s)	292, 388, 420
BspPI	GGATC	2 cut(s)	30, 457
BspT107I	GGYRCC	2 cut(s)	290, 386
BspTNI	GGTCTC	1 cut(s)	551
BsrFI	RCCGGY	2 cut(s)	304, 566
BssAI	RCCGGY	2 cut(s)	304, 566
BssECI	CCNNGG	3 cut(s)	93, 371, 414
BssMI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	2 cut(s)	11, 416
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	6 cut(s)	160, 239, 306, 317, 323, 494
BstDEI	CTNAG	2 cut(s)	258, 353
BstDSI	CCRYGG	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	2 cut(s)	237, 551
BstHHI	GCGC	2 cut(s)	321, 498
BstKTI	GATC	8 cut(s)	25, 197, 213, 228, 235, 465, 474, 510
BstMAI	GTCTC	2 cut(s)	193, 551
BstMBI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
BstMCI	CGRYCG	2 cut(s)	235, 309
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 446, 533, 536
BstNI	CCWGG	2 cut(s)	11, 416
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	9, 414
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	2 cut(s)	237, 551
BstV1I	GCAGC	3 cut(s)	265, 514, 523
BstV2I	GAAGAC	2 cut(s)	70, 180
BstX2I	RGATCY	2 cut(s)	462, 471
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	2 cut(s)	462, 471
BstZI	CGGCCG	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	5 cut(s)	134, 146, 308, 407, 440
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	6 cut(s)	160, 239, 306, 317, 323, 494
CfoI	GCGC	2 cut(s)	321, 498
Cfr10I	RCCGGY	2 cut(s)	304, 566
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	3 cut(s)	185, 278, 540
CviAII	CATG	2 cut(s)	73, 499
DdeI	CTNAG	2 cut(s)	258, 353
DpnI	GATC	8 cut(s)	24, 196, 212, 227, 234, 464, 473, 509
DpnII	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	36
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	9, 414
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	2 cut(s)	76, 502
FaiI	YATR	2 cut(s)	74, 500
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	2 cut(s)	72, 498
Fnu4HI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
FspI	TGCGCA	1 cut(s)	320
GlaI	GCGC	2 cut(s)	320, 497
GluI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
GsuI	CTGGAG	2 cut(s)	175, 263
HaeIII	GGCC	5 cut(s)	134, 146, 308, 407, 440
HapII	CCGG	2 cut(s)	305, 567
HgaI	GACGC	3 cut(s)	185, 278, 540
HhaI	GCGC	2 cut(s)	321, 498
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	76, 502
Hin6I	GCGC	2 cut(s)	319, 496
HinP1I	GCGC	2 cut(s)	319, 496
HinfI	GANTC	2 cut(s)	14, 41
HpaII	CCGG	2 cut(s)	305, 567
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	27, 40, 206, 220, 556
Hpy188III	TCNNGA	3 cut(s)	192, 346, 505
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	6 cut(s)	131, 224, 272, 404, 551, 556
HpyAV	CCTTC	6 cut(s)	110, 190, 337, 400, 433, 451
HpyCH4IV	ACGT	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 446, 533, 536
HpyF3I	CTNAG	2 cut(s)	258, 353
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	76, 502
HspAI	GCGC	2 cut(s)	319, 496
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
Kzo9I	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
LmnI	GCTCC	3 cut(s)	41, 206, 424
Lsp1109I	GCAGC	3 cut(s)	265, 514, 523
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	8 cut(s)	24, 196, 212, 227, 234, 464, 473, 509
MboI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
MboII	GAAGA	5 cut(s)	70, 157, 185, 436, 472
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	462, 471
MhlI	GDGCHC	2 cut(s)	38, 293
MluCI	AATT	2 cut(s)	109, 585
MlyI	GAGTC	2 cut(s)	23, 35
MmeI	TCCRAC	3 cut(s)	63, 243, 534
MroNI	GCCGGC	1 cut(s)	304
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	305, 567
MspR9I	CCNGG	2 cut(s)	11, 416
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	11, 416
MvnI	CGCG	2 cut(s)	237, 551
MwoI	GCNNNNNNNGC	4 cut(s)	278, 446, 533, 536
NaeI	GCCGGC	1 cut(s)	306
NdeII	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
NgoMIV	GCCGGC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	76, 502
NlaIV	GGNNCC	3 cut(s)	292, 388, 420
NmeAIII	GCCGAG	2 cut(s)	57, 93
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	320
NspI	RCATGY	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 183, 228
PdiI	GCCGGC	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	6 cut(s)	280, 451, 526, 529, 538, 565
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	2 cut(s)	22, 35
PpsI	GAGTC	2 cut(s)	22, 35
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	9, 414
PspGI	CCWGG	2 cut(s)	9, 414
PspN4I	GGNNCC	3 cut(s)	292, 388, 420
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	462, 471
PvuI	CGATCG	1 cut(s)	235
RgaI	GCGATCGC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
Sau3AI	GATC	8 cut(s)	22, 194, 210, 225, 232, 462, 471, 507
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	23, 35
ScrFI	CCNGG	2 cut(s)	11, 416
SduI	GDGCHC	2 cut(s)	38, 293
SetI	ASST	6 cut(s)	38, 102, 354, 392, 489, 549
SfaAI	GCGATCGC	1 cut(s)	235
SgfI	GCGATCGC	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	566
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	251, 578
SmoI	CTYRAG	2 cut(s)	251, 578
Sse9I	AATT	2 cut(s)	109, 585
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	6 cut(s)	82, 90, 450, 525, 561, 564
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	9, 414
StyI	CCWWGG	1 cut(s)	371
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	6 cut(s)	141, 168, 197, 429, 480, 504
TasI	AATT	2 cut(s)	109, 585
TauI	GCSGC	3 cut(s)	452, 527, 566
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	278, 527, 536
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	97
XagI	CCTNNNNNAGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.