Rorug04G0095200

MFP1 attachment factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
15034855 .. 15036280
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0095200.1

Sequence Viewer

Length: 1335 bp
ATGGAGAGGAAGACTATCTCCCGTAGAGTCAACCCATCACCACTGAGCTTCTCCTCGTCCGCCGCGGAAACCGTCGCCGACATCGAAGAACTTCTAACAGAAATCCTTCTCTGTGTGCCAGCTCGATCAGTCGTTCGTCTCAAATGCATCTCCAAGCATTGGCTCTCTCTCATCTCAAACCCCGAGTTCGGTCACCGCCACACCCTCCAAAACCCGAACCCCAAAGTCTCTGCTTTCTTCTCCCACACAACCCAAGACTTCACCTTCATTTCTCTCCATAAAAACCCATCTGGGTCTTTCCCACCTCGTCTTTTTGTCCATGACCTTCACACTGCTAACCATCAACGCTCTATCAACCCCTTCAAAAGTCTCAACATCTTTAATAGTTTCGTCCAAGGCGATCGGAATGGGTTTGGGTTGAAGATTCTTCAGTCCTGCAATGGCCTCTTTCTGTGCATTCCATTTTCTACACACAAAAGAAGACACTATCATTCCATCTATTTTGGCAATCCCACATCACAATATCATTCTATCTATGTTGTCAATCCCGCCTCCAACCAATTCTTGGCTCTTCCGCCTCCGAGGGCTGGGAAAAGCACAGAATTCGTGCGGTATGCTCTGGCTTTTGACCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCCTTAGTACTACCCGCAAGCACAATTGGGTGCACCAGGTGGACGTTTATTCGTCTGAGACTCGATCTTGGAGGCTTCTCGAGACGCCTTACGCCTCCAGGGACCTTGATATGCACTTGGATGGCAGGAGCAGTGTACTGCAACGGCACGATTCATTGGATAAGAGACGAAACAGAGCTGCCGATTCGTGTTGTGCCCCTCTGGTTGTAACTGGATACTATCCTCCTAAGTTTCCGAAATTTGATCATAGATATTTTGGGGAGTCTGGTGATCATTTGTATTTGATTGATGTATATGAGGACTCTTCGTCAAAAAATAATATATATAAGGATTGTAATGCTGAATTTGATGTCATGGAGATGGGCAAGGACTACTCTGGCTGGTTTGTCAAGTATCATGTTGATCTTAATCCCGTAGTTGCTGCATTCCGTGGCAATTATGATCACTTTTCTCGTTTTTATGTCTTGTTTCTTGGTGGAGAGGGAAAAGAAGAACAAGAACAACAGCAACAGCAGGAGGTTTCTTCATCTCTTTTGTTCCATGTTCCTGGTAAGGTCATATCTTATAATCTTAGAAATAAGACCTTTAAGACATATGTGGACTTGGCCATTAAGGACTATTTTCTAGTTGGGGGATATAATTATCCTTACATGGAGACTTTAGCTTCTGTGTGA

Protein Analysis

444

Amino Acids

51.04

Weight (kDa)

8.9

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 65 5.4e-06 F-box domain
FBA_1 PF07734 142 - 254 3.1e-07 F-box associated beta propeller domain
FBA_3 PF08268 166 - 253 2.4e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1227
AccB7I CCANNNNNTGG 2 cut(s) 159, 565
AccII CGCG 1 cut(s) 65
AciI CCGC 8 cut(s) 60, 63, 65, 196, 549, 575, 610, 676
AcoI YGGCCR 1 cut(s) 1266
AcsI RAATTY 3 cut(s) 602, 899, 1004
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 746
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 2 cut(s) 670, 798
AfiI CCNNNNNNNGG 4 cut(s) 159, 188, 565, 587
AgsI TTSAA 2 cut(s) 364, 421
AhdI GACNNNNNGTC 1 cut(s) 967
AjnI CCWGG 3 cut(s) 696, 758, 1207
AluBI AGCT 4 cut(s) 48, 122, 839, 1325
AluI AGCT 4 cut(s) 48, 122, 839, 1325
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 7 cut(s) 143, 232, 374, 713, 737, 820, 1310
Alw44I GTGCAC 1 cut(s) 692
Ama87I CYCGRG 2 cut(s) 182, 740
AoxI GGCC 2 cut(s) 442, 1266
ApaLI GTGCAC 1 cut(s) 692
ApeKI GCWGC 2 cut(s) 839, 1082
ApoI RAATTY 3 cut(s) 602, 899, 1004
Asp700I GAANNNNTTC 2 cut(s) 90, 105
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 4 cut(s) 30, 185, 253, 941
AvaI CYCGRG 2 cut(s) 182, 740
AvaII GGWCC 1 cut(s) 763
BaeGI GKGCMC 2 cut(s) 696, 859
BalI TGGCCA 1 cut(s) 1268
BbsI GAAGAC 2 cut(s) 17, 487
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 2 cut(s) 826, 1069
BccI CCATC 6 cut(s) 43, 295, 348, 503, 776, 1015
BceAI ACGGC 1 cut(s) 821
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BciT130I CCWGG 3 cut(s) 698, 760, 1209
BciVI GTATCC 1 cut(s) 869
BclI TGATCA 3 cut(s) 904, 931, 1102
BcoDI GTCTC 7 cut(s) 143, 232, 374, 713, 737, 820, 1310
BfaI CTAG 1 cut(s) 1286
BfuI GTATCC 1 cut(s) 869
BisI GCNGC 3 cut(s) 63, 840, 1083
BlsI GCNGC 3 cut(s) 64, 841, 1084
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 3 cut(s) 698, 760, 1209
Bme18I GGWCC 1 cut(s) 763
BmeRI GACNNNNNGTC 1 cut(s) 967
BmeT110I CYCGRG 2 cut(s) 182, 740
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 1 cut(s) 764
BmrFI CCNGG 3 cut(s) 698, 760, 1209
BmsI GCATC 1 cut(s) 156
BpiI GAAGAC 2 cut(s) 17, 487
BpmI CTGGAG 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 746
BsaJI CCNNGG 5 cut(s) 63, 394, 581, 759, 1090
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 188, 565, 587
Bse1I ACTGG 1 cut(s) 877
Bse3DI GCAATG 1 cut(s) 445
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 3 cut(s) 698, 760, 1209
BseDI CCNNGG 5 cut(s) 63, 394, 581, 759, 1090
BseGI GGATG 1 cut(s) 787
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 4 cut(s) 159, 188, 565, 587
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 35, 708
BseNI ACTGG 1 cut(s) 877
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 2 cut(s) 696, 859
BseXI GCAGC 2 cut(s) 826, 1069
BseYI CCCAGC 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 2 cut(s) 444, 1268
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 2 cut(s) 182, 740
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 4 cut(s) 159, 188, 565, 587
BsmAI GTCTC 7 cut(s) 143, 232, 374, 713, 737, 820, 1310
BsmBI CGTCTC 3 cut(s) 143, 737, 820
BsmFI GGGAC 1 cut(s) 776
BsmI GAATGC 2 cut(s) 456, 1085
BsnI GGCC 2 cut(s) 444, 1268
BsoBI CYCGRG 2 cut(s) 182, 740
Bsp1286I GDGCHC 2 cut(s) 696, 859
Bsp143I GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
BspACI CCGC 8 cut(s) 60, 63, 65, 196, 549, 575, 610, 676
BspANI GGCC 2 cut(s) 444, 1268
BspCNI CTCAG 2 cut(s) 36, 709
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 764
BspQI GCTCTTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 1 cut(s) 877
BssECI CCNNGG 5 cut(s) 63, 394, 581, 759, 1090
BssMI GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
BssNI GRCGYC 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 3 cut(s) 698, 760, 1209
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 2 cut(s) 576, 970
BstACI GRCGYC 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 120, 680
BstDEI CTNAG 5 cut(s) 44, 665, 717, 888, 1232
BstDSI CCRYGG 2 cut(s) 63, 1090
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 1 cut(s) 787
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 7 cut(s) 128, 403, 728, 907, 934, 1066, 1105
BstMAI GTCTC 7 cut(s) 143, 232, 374, 713, 737, 820, 1310
BstMBI GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
BstMCI CGRYCG 1 cut(s) 403
BstNI CCWGG 3 cut(s) 698, 760, 1209
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 696, 758, 1207
BstSLI GKGCMC 2 cut(s) 696, 859
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 826, 1069
BstV2I GAAGAC 2 cut(s) 17, 487
BstXI CCANNNNNNTGG 1 cut(s) 1208
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 2 cut(s) 444, 1268
BtgI CCRYGG 2 cut(s) 63, 1090
BtsCI GGATG 1 cut(s) 787
BtsI GCAGTG 2 cut(s) 330, 799
BtsIMutI CAGTG 3 cut(s) 41, 330, 799
Cac8I GCNNGC 2 cut(s) 120, 680
Cfr13I GGNCC 1 cut(s) 763
Cfr42I CCGCGG 1 cut(s) 66
CseI GACGC 1 cut(s) 754
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 2 cut(s) 669, 797
CviAII CATG 5 cut(s) 320, 1015, 1058, 1202, 1312
CviQI GTAC 2 cut(s) 669, 797
DdeI CTNAG 5 cut(s) 44, 665, 717, 888, 1232
DpnI GATC 7 cut(s) 127, 402, 727, 906, 933, 1065, 1104
DpnII GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
DraIII CACNNNGTG 1 cut(s) 700
DriI GACNNNNNGTC 1 cut(s) 967
EaeI YGGCCR 1 cut(s) 1266
Eam1104I CTCTTC 2 cut(s) 576, 970
Eam1105I GACNNNNNGTC 1 cut(s) 967
EarI CTCTTC 2 cut(s) 576, 970
EciI GGCGGA 2 cut(s) 49, 564
Eco130I CCWWGG 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 2 cut(s) 182, 740
Eco91I GGTNACC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 763
EcoO65I GGTNACC 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 696, 758, 1207
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 394
Esp3I CGTCTC 3 cut(s) 143, 737, 820
FaeI CATG 5 cut(s) 323, 1018, 1061, 1205, 1315
FaqI GGGAC 1 cut(s) 776
FatI CATG 5 cut(s) 319, 1014, 1057, 1201, 1311
FauI CCCGC 2 cut(s) 556, 683
FauNDI CATATG 1 cut(s) 1255
FbaI TGATCA 3 cut(s) 904, 931, 1102
Fnu4HI GCNGC 3 cut(s) 63, 840, 1083
FokI GGATG 1 cut(s) 794
Fsp4HI GCNGC 3 cut(s) 63, 840, 1083
FspBI CTAG 1 cut(s) 1286
GluI GCNGC 3 cut(s) 63, 840, 1083
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 742
HaeIII GGCC 2 cut(s) 444, 1268
HgaI GACGC 1 cut(s) 754
Hin1I GRCGYC 1 cut(s) 746
Hin1II CATG 5 cut(s) 323, 1018, 1061, 1205, 1315
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 7 cut(s) 27, 424, 721, 812, 845, 923, 962
HphI GGTGA 4 cut(s) 30, 185, 253, 941
Hpy166II GTNNAC 5 cut(s) 31, 694, 703, 797, 1261
Hpy188I TCNGA 4 cut(s) 405, 582, 718, 897
Hpy188III TCNNGA 2 cut(s) 740, 742
Hpy8I GTNNAC 5 cut(s) 31, 694, 703, 797, 1261
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 5 cut(s) 116, 274, 335, 370, 642
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 7 cut(s) 147, 438, 456, 694, 775, 802, 1085
HpyF3I CTNAG 5 cut(s) 44, 665, 717, 888, 1232
HpySE526I ACGT 1 cut(s) 705
Hsp92I GRCGYC 1 cut(s) 746
Hsp92II CATG 5 cut(s) 323, 1018, 1061, 1205, 1315
Ksp22I TGATCA 3 cut(s) 904, 931, 1102
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 1 cut(s) 789
Lsp1109I GCAGC 2 cut(s) 826, 1069
LweI GCATC 1 cut(s) 156
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 1 cut(s) 1286
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 2 cut(s) 191, 868
MalI GATC 7 cut(s) 127, 402, 727, 906, 933, 1065, 1104
MboI GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
MfeI CAATTG 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 696, 859
MlsI TGGCCA 1 cut(s) 1268
MluCI AATT 7 cut(s) 560, 602, 685, 899, 1004, 1096, 1300
MluNI TGGCCA 1 cut(s) 1268
MlyI GAGTC 4 cut(s) 36, 715, 932, 956
MmeI TCCRAC 1 cut(s) 579
Mox20I TGGCCA 1 cut(s) 1268
Mph1103I ATGCAT 1 cut(s) 149
MroXI GAANNNNTTC 2 cut(s) 90, 105
MscI TGGCCA 1 cut(s) 1268
MseI TTAA 4 cut(s) 381, 1068, 1248, 1272
MslI CAYNNNNRTG 2 cut(s) 780, 1019
Msp20I TGGCCA 1 cut(s) 1268
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 3 cut(s) 698, 760, 1209
MunI CAATTG 1 cut(s) 685
Mva1269I GAATGC 2 cut(s) 456, 1085
MvaI CCWGG 3 cut(s) 698, 760, 1209
MvnI CGCG 1 cut(s) 65
NdeI CATATG 1 cut(s) 1255
NdeII GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
NlaIII CATG 5 cut(s) 323, 1018, 1061, 1205, 1315
NlaIV GGNNCC 1 cut(s) 764
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 576
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 396
PctI GAATGC 2 cut(s) 456, 1085
PdmI GAANNNNTTC 2 cut(s) 90, 105
PfeI GAWTC 3 cut(s) 424, 812, 845
PflMI CCANNNNNTGG 2 cut(s) 159, 565
PkrI GCNGC 3 cut(s) 64, 841, 1084
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 4 cut(s) 35, 715, 931, 956
PpsI GAGTC 4 cut(s) 35, 715, 931, 956
PpuMI RGGWCCY 1 cut(s) 763
PsiI TTATAA 1 cut(s) 1227
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 3 cut(s) 696, 758, 1207
PspEI GGTNACC 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 3 cut(s) 696, 758, 1207
PspN4I GGNNCC 1 cut(s) 764
PspPI GGNCC 1 cut(s) 763
PspPPI RGGWCCY 1 cut(s) 763
PvuI CGATCG 1 cut(s) 403
RsaI GTAC 2 cut(s) 670, 798
RsaNI GTAC 2 cut(s) 669, 797
RseI CAYNNNNRTG 2 cut(s) 780, 1019
SacII CCGCGG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 4 cut(s) 381, 1068, 1248, 1272
SatI GCNGC 3 cut(s) 63, 840, 1083
Sau3AI GATC 7 cut(s) 125, 400, 725, 904, 931, 1063, 1102
Sau96I GGNCC 1 cut(s) 763
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 4 cut(s) 36, 715, 932, 956
ScrFI CCNGG 3 cut(s) 698, 760, 1209
SduI GDGCHC 2 cut(s) 696, 859
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 740
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SinI GGWCC 1 cut(s) 763
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 2 cut(s) 780, 1019
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 7 cut(s) 560, 602, 685, 899, 1004, 1096, 1300
SsiI CCGC 8 cut(s) 60, 63, 65, 196, 549, 575, 610, 676
SspMI CTAG 1 cut(s) 1286
StyD4I CCNGG 3 cut(s) 696, 758, 1207
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 708
TaqI TCGA 4 cut(s) 84, 124, 724, 741
TaqII GACCGA 1 cut(s) 179
TasI AATT 7 cut(s) 560, 602, 685, 899, 1004, 1096, 1300
TatI WGTACW 2 cut(s) 668, 796
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 3 cut(s) 424, 812, 845
Tru1I TTAA 4 cut(s) 381, 1068, 1248, 1272
Tru9I TTAA 4 cut(s) 381, 1068, 1248, 1272
TscAI CASTG 3 cut(s) 48, 337, 799
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 839, 1082
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 256, 804, 1176
TspGWI ACGGA 1 cut(s) 1079
TspRI CASTG 3 cut(s) 48, 337, 799
Van91I CCANNNNNTGG 2 cut(s) 159, 565
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 3 cut(s) 602, 899, 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 740
XmnI GAANNNNTTC 2 cut(s) 90, 105
XspI CTAG 1 cut(s) 1286
ZrmI AGTACT 1 cut(s) 670
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.