Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Forward (+)

25266412 .. 25267952

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG142400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGTGTCCGCAACATCGCCGTGAACCTTCTGGTCAAGTTCCTCACCACTTCCGACGAGGCCCAAGTCGAGGCTCGCCTCATCGAGAAAGACGCCTTCGCCGCCACCAGAATGATGATCCGAACGATCTACTCCGAGGAGATCAGCGATCGCATGGTGGAGGTCCTCAAGGCTAAGAACACCGGCGCTTCTGCTGCTGGAAAGGGCACCCTGTTGTTGCCGGATGATGGCAGGCCTAAGCCCTTCGTGGGCCTTATTATCAAGAATCTCAGCAGTCCCTCCTCTCCCTTGACACACTTCGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCAAGAAGCCTTCCTCGCCGTCAAGATGAAGATCCGTAAGACCTACAACCGTGAGGTCTGCAAGCGCGTGTTGGAGATCAAACACAAGAACGCCGCTGCTTCTGCTGCTGGAAACATTGCGTCGGAGACTGAGGAACTGTGGTGTGCTTGCGGCAATTGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

170

Amino Acids

18.56

Weight (kDa)

8.68

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	206, 302
AccII	CGCG	1 cut(s)	414
AciI	CCGC	4 cut(s)	10, 102, 441, 498
AclWI	GGATC	2 cut(s)	112, 373
AcyI	GRCGYC	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	70, 227, 248
AjnI	CCWGG	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	112, 373
AoxI	GGCC	4 cut(s)	60, 233, 250, 321
ApeKI	GCWGC	3 cut(s)	194, 443, 452
AsiSI	GCGATCGC	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	188, 414
AspS9I	GGNCC	3 cut(s)	61, 163, 250
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	2 cut(s)	206, 302
BbvI	GCAGC	3 cut(s)	181, 430, 439
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	5, 350
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	6 cut(s)	102, 195, 441, 444, 453, 499
BlsI	GCNGC	6 cut(s)	103, 196, 442, 445, 454, 500
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	61, 163, 250
BmiI	GGNNCC	3 cut(s)	208, 304, 336
BmrFI	CCNGG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	135, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 227, 248
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	135, 330
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	377
BseLI	CCNNNNNNNGG	3 cut(s)	70, 227, 248
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	283, 468
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	2 cut(s)	152, 271
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	181, 430, 439
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	4 cut(s)	62, 235, 252, 323
BshNI	GGYRCC	2 cut(s)	206, 302
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	183, 221
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	70, 227, 248
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	4 cut(s)	62, 235, 252, 323
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
BspACI	CCGC	4 cut(s)	10, 102, 441, 498
BspANI	GGCC	4 cut(s)	62, 235, 252, 323
BspCNI	CTCAG	2 cut(s)	282, 469
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	208, 304, 336
BspPI	GGATC	2 cut(s)	112, 373
BspT107I	GGYRCC	2 cut(s)	206, 302
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	135, 330
BssMI	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	398, 486
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	4 cut(s)	76, 233, 410, 496
BstDEI	CTNAG	4 cut(s)	174, 237, 269, 477
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 414
BstKTI	GATC	6 cut(s)	120, 129, 144, 151, 381, 426
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 194, 362, 449, 452, 504
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	181, 430, 439
BstX2I	RGATCY	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	4 cut(s)	62, 235, 252, 323
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	4 cut(s)	76, 233, 410, 496
CfoI	GCGC	2 cut(s)	188, 414
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	61, 163, 250
CseI	GACGC	2 cut(s)	101, 456
CviAII	CATG	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	174, 237, 269, 477
DpnI	GATC	6 cut(s)	119, 128, 143, 150, 380, 425
DpnII	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
Eco147I	AGGCCT	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	157
FaiI	YATR	1 cut(s)	155
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	6 cut(s)	102, 195, 441, 444, 453, 499
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	102, 195, 441, 444, 453, 499
GlaI	GCGC	2 cut(s)	187, 413
GluI	GCNGC	6 cut(s)	102, 195, 441, 444, 453, 499
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	62, 235, 252, 323
HapII	CCGG	2 cut(s)	183, 221
HgaI	GACGC	2 cut(s)	101, 456
HhaI	GCGC	2 cut(s)	188, 414
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	2 cut(s)	186, 412
HinP1I	GCGC	2 cut(s)	186, 412
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	183, 221
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	55, 122, 136, 472
Hpy188III	TCNNGA	3 cut(s)	85, 262, 370
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	3 cut(s)	59, 320, 472
HpyAV	CCTTC	6 cut(s)	38, 106, 253, 316, 349, 367
HpyCH4III	ACNGT	2 cut(s)	398, 486
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 194, 362, 449, 452, 504
HpyF3I	CTNAG	4 cut(s)	174, 237, 269, 477
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	2 cut(s)	186, 412
Kzo9I	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	3 cut(s)	181, 430, 439
MalI	GATC	6 cut(s)	119, 128, 143, 150, 380, 425
MboI	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
MboII	GAAGA	1 cut(s)	388
MfeI	CAATTG	1 cut(s)	502
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	1 cut(s)	502
MmeI	TCCRAC	3 cut(s)	78, 399, 450
MslI	CAYNNNNRTG	2 cut(s)	20, 110
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	183, 221
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	6 cut(s)	101, 194, 362, 449, 452, 504
NdeII	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	208, 304, 336
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	6 cut(s)	103, 196, 442, 445, 454, 500
Ple19I	CGATCG	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	3 cut(s)	208, 304, 336
PspPI	GGNCC	3 cut(s)	61, 163, 250
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	378
PvuI	CGATCG	1 cut(s)	151
RgaI	GCGATCGC	1 cut(s)	151
RseI	CAYNNNNRTG	2 cut(s)	20, 110
SatI	GCNGC	6 cut(s)	102, 195, 441, 444, 453, 499
Sau3AI	GATC	6 cut(s)	117, 126, 141, 148, 378, 423
Sau96I	GGNCC	3 cut(s)	61, 163, 250
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	5 cut(s)	30, 165, 308, 392, 405
SfaAI	GCGATCGC	1 cut(s)	151
SgfI	GCGATCGC	1 cut(s)	151
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	20, 110
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	502
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	4 cut(s)	10, 102, 441, 498
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	398, 486
TaqI	TCGA	3 cut(s)	69, 84, 345
TasI	AATT	1 cut(s)	502
TauI	GCSGC	3 cut(s)	104, 443, 501
TfiI	GAWTC	1 cut(s)	265
TseI	GCWGC	3 cut(s)	194, 443, 452
TspDTI	ATGAA	2 cut(s)	331, 389
TspGWI	ACGGA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.