Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Reverse (-)

11626038 .. 11626442

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATTAACGTGTACATCAAGTGTGGCCAAGAAGAGGTGGCCTGCATAATTTTTGACAATATGCCGAATAAGACTGTAGTATCATATAACTCGTTGCTTTCTGGTTTCATAAGAAGTGGTGACGTGAAATCAGCTTGGAAAATGTTCAATGAGATGCCAAGGAGTGATCTTGTCTCTTGGAACACTGTGATTGGTGCTCTGGTCCAAGAGAGCAAGTTTGAGGAAGCAATTGAACTTTTCCGGGTGGTTCAGAGTGAGGGAATAAAAGGATATAGGGTGACCATGGTGGAGATTGCATCTGCCTGCGGATATCTACGAGCTCTTGTTCTTGCAAAGTGGACACATGCTTATATCGAAAAAAAAAAAATGAAATTAACTGTGATATGCGGCTCGGGACAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

134

Amino Acids

15.05

Weight (kDa)

8.68

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	25 - 55	1.2e-09	PPR repeat family
PPR_1	PF12854	25 - 52	1.7e-07	PPR repeat
PPR	PF01535	27 - 56	4.6e-08	PPR repeat
PPR	PF01535	58 - 88	2.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	306, 387
AcoI	YGGCCR	1 cut(s)	25
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	148, 233
AjiI	CACGTC	1 cut(s)	124
AluBI	AGCT	2 cut(s)	134, 320
AluI	AGCT	2 cut(s)	134, 320
Alw21I	GWGCWC	2 cut(s)	199, 322
Alw26I	GTCTC	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	25, 39
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	131, 289
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BalI	TGGCCA	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	322
Bbv12I	GWGCWC	2 cut(s)	199, 322
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	144, 305
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	158, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	158, 282
BseLI	CCNNNNNNNGG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	27, 41
BsiHKAI	GWGCWC	2 cut(s)	199, 322
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	27, 41
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	199, 322
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	2 cut(s)	306, 387
BspANI	GGCC	2 cut(s)	27, 41
BsrGI	TGTACA	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	158, 282
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	158, 282
Bst4CI	ACNGT	3 cut(s)	76, 187, 379
Bst6I	CTCTTC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	43, 304
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	347
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	27, 41
BtgI	CCRYGG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	43, 304
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	283, 344
CviJI	RGCY	6 cut(s)	27, 41, 134, 320, 390, 400
CviKI_1	RGCY	6 cut(s)	27, 41, 134, 320, 390, 400
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	158, 282
Eco24I	GRGCYC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	391
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	158, 282
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	158, 282
FaeI	CATG	2 cut(s)	286, 347
FatI	CATG	2 cut(s)	282, 343
Fnu4HI	GCNGC	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	27, 41
HapII	CCGG	1 cut(s)	241
Hin1II	CATG	2 cut(s)	286, 347
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	131, 289
Hpy166II	GTNNAC	2 cut(s)	13, 339
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	393
Hpy8I	GTNNAC	2 cut(s)	13, 339
HpyCH4III	ACNGT	3 cut(s)	76, 187, 379
HpyCH4IV	ACGT	2 cut(s)	9, 123
HpyCH4V	TGCA	3 cut(s)	45, 296, 332
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	2 cut(s)	9, 123
Hsp92II	CATG	2 cut(s)	286, 347
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	55, 87, 185, 254, 316
LweI	GCATC	2 cut(s)	144, 305
MaeII	ACGT	2 cut(s)	9, 123
MaeIII	GTNAC	2 cut(s)	119, 277
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	44
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	2 cut(s)	199, 322
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	3 cut(s)	48, 228, 371
MluNI	TGGCCA	1 cut(s)	27
MnlI	CCTC	3 cut(s)	28, 214, 250
Mox20I	TGGCCA	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	2 cut(s)	6, 374
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	228
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	286, 347
NmuCI	GTSAC	2 cut(s)	119, 277
NspI	RCATGY	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	202
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	6, 374
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	199, 322
SetI	ASST	5 cut(s)	12, 39, 126, 136, 322
SfaNI	GCATC	2 cut(s)	144, 305
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	48, 228, 371
SsiI	CCGC	2 cut(s)	306, 387
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	158, 282
TaaI	ACNGT	3 cut(s)	76, 187, 379
TaiI	ACGT	2 cut(s)	12, 126
TaqI	TCGA	1 cut(s)	354
TasI	AATT	3 cut(s)	48, 228, 371
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	6, 374
Tru9I	TTAA	2 cut(s)	6, 374
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	119, 277
Tsp45I	GTSAC	2 cut(s)	119, 277
TspDTI	ATGAA	2 cut(s)	97, 383
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.