Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Reverse (-)

32543691 .. 32544296

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAGTCCAGGAGTCACAGGATCGGAACACCTACAGCCTATTCTTGCCGACCATGCGCACCCGCAACGCCGCCCTGAACCTTCTGGTCAAGTTCCTCACTACTTCTGACGAGGCCGAAGAGATCTGCGAGCGCATAGTGGAGGTCCACAAGGCTAAGAATACCGGCGCTTCTGCTGTTGGAAACGGCGCCCTGTTGTTGCCGGACATTGGCAGGCTCAAGCCCATCGTGGACCTTATTATCAAGGACCTCAGCAGTCTTTCCTCTCCCTTCAGACACTTCGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCAAGAGGCCTTCGTCGCCGCCAGGATGAAGATCCGTCAGATCTACATCCATGAGGTCTGCAAGCGCATGGTGGAGATCAAATACAAGGACGCCGCTGCTTCTGCTGCTGGAAACGTCGCGTCGGAGACCGCCGCCGGTGGTGTGCCTGAGGCAATTGAAAGTAAGCCAAAATCCATGGAATTAGCAGAATCCATGGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

177

Amino Acids

19.41

Weight (kDa)

5.48

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
AccB1I	GGYRCC	2 cut(s)	188, 284
AccII	CGCG	1 cut(s)	449
AciI	CCGC	6 cut(s)	64, 72, 348, 423, 459, 462
AclWI	GGATC	2 cut(s)	30, 355
AcuI	CTGAAG	1 cut(s)	256
AcyI	GRCGYC	2 cut(s)	189, 420
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	3 cut(s)	9, 312, 350
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	30, 355
AoxI	GGCC	3 cut(s)	114, 303, 336
ApeKI	GCWGC	2 cut(s)	425, 434
AspLEI	GCGC	5 cut(s)	60, 135, 170, 191, 396
AspS9I	GGNCC	3 cut(s)	145, 232, 247
AvaII	GGWCC	3 cut(s)	145, 232, 247
AxyI	CCTNAGG	1 cut(s)	477
BanI	GGYRCC	2 cut(s)	188, 284
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	412, 421
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	3 cut(s)	11, 314, 352
BcoDI	GTCTC	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	34
BfoI	RGCGCY	2 cut(s)	171, 192
BglII	AGATCT	2 cut(s)	123, 369
BisI	GCNGC	6 cut(s)	72, 348, 423, 426, 435, 462
BlsI	GCNGC	6 cut(s)	73, 349, 424, 427, 436, 463
Bme1390I	CCNGG	3 cut(s)	11, 314, 352
Bme18I	GGWCC	3 cut(s)	145, 232, 247
BmgT120I	GGNCC	3 cut(s)	145, 232, 247
BmiI	GGNNCC	3 cut(s)	190, 286, 318
BmrFI	CCNGG	3 cut(s)	11, 314, 352
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	203
BsaBI	GATNNNNATC	2 cut(s)	359, 374
BsaHI	GRCGYC	2 cut(s)	189, 420
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	3 cut(s)	312, 504, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	2 cut(s)	164, 464
Bse21I	CCTNAGG	1 cut(s)	477
Bse8I	GATNNNNATC	2 cut(s)	359, 374
BseBI	CCWGG	3 cut(s)	11, 314, 352
BseDI	CCNNGG	3 cut(s)	312, 504, 522
BseGI	GGATG	2 cut(s)	360, 375
BseJI	GATNNNNATC	2 cut(s)	359, 374
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	265, 468
BseXI	GCAGC	2 cut(s)	412, 421
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	116, 305, 338
BshNI	GGYRCC	2 cut(s)	188, 284
BsiSI	CCGG	3 cut(s)	165, 203, 465
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	116, 305, 338
Bso31I	GGTCTC	1 cut(s)	449
Bsp143I	GATC	5 cut(s)	22, 123, 360, 369, 405
Bsp19I	CCATGG	2 cut(s)	504, 522
BspACI	CCGC	6 cut(s)	64, 72, 348, 423, 459, 462
BspANI	GGCC	3 cut(s)	116, 305, 338
BspCNI	CTCAG	2 cut(s)	264, 469
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	3 cut(s)	190, 286, 318
BspPI	GGATC	2 cut(s)	30, 355
BspT107I	GGYRCC	2 cut(s)	188, 284
BspTNI	GGTCTC	1 cut(s)	449
BsrFI	RCCGGY	2 cut(s)	164, 464
BssAI	RCCGGY	2 cut(s)	164, 464
BssECI	CCNNGG	3 cut(s)	312, 504, 522
BssMI	GATC	5 cut(s)	22, 123, 360, 369, 405
BssNI	GRCGYC	2 cut(s)	189, 420
BssT1I	CCWWGG	2 cut(s)	504, 522
Bst2UI	CCWGG	3 cut(s)	11, 314, 352
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	2 cut(s)	189, 420
BstC8I	GCNNGC	3 cut(s)	131, 215, 392
BstDEI	CTNAG	3 cut(s)	156, 251, 477
BstDSI	CCRYGG	2 cut(s)	504, 522
BstF5I	GGATG	2 cut(s)	360, 375
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	2 cut(s)	171, 192
BstHHI	GCGC	5 cut(s)	60, 135, 170, 191, 396
BstKTI	GATC	5 cut(s)	25, 126, 363, 372, 408
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	5 cut(s)	22, 123, 360, 369, 405
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 344, 431, 434
BstNI	CCWGG	3 cut(s)	11, 314, 352
BstSCI	CCNGG	3 cut(s)	9, 312, 350
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	412, 421
BstX2I	RGATCY	3 cut(s)	123, 360, 369
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	3 cut(s)	123, 360, 369
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	116, 305, 338
BtgI	CCRYGG	2 cut(s)	504, 522
BtsCI	GGATG	2 cut(s)	360, 375
Cac8I	GCNNGC	3 cut(s)	131, 215, 392
CfoI	GCGC	5 cut(s)	60, 135, 170, 191, 396
Cfr10I	RCCGGY	2 cut(s)	164, 464
Cfr13I	GGNCC	3 cut(s)	145, 232, 247
CseI	GACGC	2 cut(s)	428, 438
CviAII	CATG	5 cut(s)	55, 380, 397, 505, 523
DdeI	CTNAG	3 cut(s)	156, 251, 477
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	5 cut(s)	24, 125, 362, 371, 407
DpnII	GATC	5 cut(s)	22, 123, 360, 369, 405
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	504, 522
Eco147I	AGGCCT	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	3 cut(s)	145, 232, 247
Eco57I	CTGAAG	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	9, 312, 350
EcoT14I	CCWWGG	2 cut(s)	504, 522
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	504, 522
FaeI	CATG	5 cut(s)	58, 383, 400, 508, 526
FaiI	YATR	6 cut(s)	56, 137, 381, 398, 506, 524
FatI	CATG	5 cut(s)	54, 379, 396, 504, 522
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	6 cut(s)	72, 348, 423, 426, 435, 462
FokI	GGATG	2 cut(s)	362, 367
Fsp4HI	GCNGC	6 cut(s)	72, 348, 423, 426, 435, 462
FspAI	RTGCGCAY	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	5 cut(s)	59, 134, 169, 190, 395
GluI	GCNGC	6 cut(s)	72, 348, 423, 426, 435, 462
HaeII	RGCGCY	2 cut(s)	171, 192
HaeIII	GGCC	3 cut(s)	116, 305, 338
HapII	CCGG	3 cut(s)	165, 203, 465
HgaI	GACGC	2 cut(s)	428, 438
HhaI	GCGC	5 cut(s)	60, 135, 170, 191, 396
Hin1I	GRCGYC	2 cut(s)	189, 420
Hin1II	CATG	5 cut(s)	58, 383, 400, 508, 526
Hin6I	GCGC	5 cut(s)	58, 133, 168, 189, 394
HinP1I	GCGC	5 cut(s)	58, 133, 168, 189, 394
HinfI	GANTC	2 cut(s)	14, 518
HpaII	CCGG	3 cut(s)	165, 203, 465
Hpy166II	GTNNAC	2 cut(s)	148, 232
Hpy188I	TCNGA	5 cut(s)	27, 109, 275, 369, 454
Hpy8I	GTNNAC	2 cut(s)	148, 232
Hpy99I	CGWCG	4 cut(s)	302, 347, 449, 454
HpyAV	CCTTC	5 cut(s)	92, 280, 298, 331, 349
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 344, 431, 434
HpyF3I	CTNAG	3 cut(s)	156, 251, 477
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	2 cut(s)	189, 420
Hsp92II	CATG	5 cut(s)	58, 383, 400, 508, 526
HspAI	GCGC	5 cut(s)	58, 133, 168, 189, 394
KasI	GGCGCC	1 cut(s)	188
Kzo9I	GATC	5 cut(s)	22, 123, 360, 369, 405
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	2 cut(s)	412, 421
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	5 cut(s)	24, 125, 362, 371, 407
MboI	GATC	5 cut(s)	22, 123, 360, 369, 405
MboII	GAAGA	2 cut(s)	131, 370
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	3 cut(s)	123, 360, 369
MluCI	AATT	2 cut(s)	483, 509
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	160, 432
MnlI	CCTC	9 cut(s)	106, 107, 136, 260, 274, 295, 328, 376, 472
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	165, 203, 465
MspR9I	CCNGG	3 cut(s)	11, 314, 352
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	3 cut(s)	11, 314, 352
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	4 cut(s)	55, 344, 431, 434
NarI	GGCGCC	1 cut(s)	189
NcoI	CCATGG	2 cut(s)	504, 522
NdeII	GATC	5 cut(s)	22, 123, 360, 369, 405
NlaIII	CATG	5 cut(s)	58, 383, 400, 508, 526
NlaIV	GGNNCC	3 cut(s)	190, 286, 318
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	6 cut(s)	73, 349, 424, 427, 436, 463
PleI	GAGTC	1 cut(s)	22
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	3 cut(s)	9, 312, 350
PspGI	CCWGG	3 cut(s)	9, 312, 350
PspN4I	GGNNCC	3 cut(s)	190, 286, 318
PspPI	GGNCC	3 cut(s)	145, 232, 247
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	3 cut(s)	123, 360, 369
SatI	GCNGC	6 cut(s)	72, 348, 423, 426, 435, 462
Sau3AI	GATC	5 cut(s)	22, 123, 360, 369, 405
Sau96I	GGNCC	3 cut(s)	145, 232, 247
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	11, 314, 352
SetI	ASST	8 cut(s)	35, 84, 147, 237, 252, 290, 387, 447
SfcI	CTRYAG	1 cut(s)	34
SfoI	GGCGCC	1 cut(s)	190
SgrAI	CRCCGGYG	1 cut(s)	464
SinI	GGWCC	3 cut(s)	145, 232, 247
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	483, 509
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	6 cut(s)	64, 72, 348, 423, 459, 462
SspDI	GGCGCC	1 cut(s)	188
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	9, 312, 350
StyI	CCWWGG	2 cut(s)	504, 522
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	483, 509
TauI	GCSGC	4 cut(s)	74, 350, 425, 464
TfiI	GAWTC	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	425, 434
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	313, 371
TspGWI	ACGGA	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	145, 232, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.