Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Reverse (-)

30089698 .. 30090288

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG150600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAGTCCAGGAGTCACAGGATCAGAACATCTACAGCCTATTCTTGCCGACCATGCGCACCCGCAACACCGGCCTGAACCTTCTGGTCAAGTTCCTCACCACTTCTGACGAGGCCGAAGTCGAGGCTCGCCTCTTCGAGAAAGACGCCTTCGCCGCCACCAGAATGACTATCGGAACGATCTACTCCGAGGAGATCAGCGAGCGCATAGTGGAGGTCCTCAAGGCTAAGAATACCGGCGCTTCTGCTGCTGGAAACGGCGCCCTGTTGTTGCCGGACGTTGGCAGGCTCAAGCCCATCGTGAACGTTATTATCAAGGACCTCAGCAGTCCCTTCTCTCCCTTTAGAGACTTCGGCACCTTCTCCACCGACGAGGCCAAAGCTCTGGCTCCTCTCATCGAGCAAGAGGCCTTCATCGCCACCAGGATCAAGATCCGTCAGATCTACATCCATGAGGTCTGCAAGCGCATGGCGGAGATCAAATACAAGGACGCCGCTGCTTCTGCTGCTGGAAACGTCGCGTCGGAGACTGCCGCCGGTGGTGTGCCTGCTGAGGCAATTGAAAGTCAGCTAAAATCCATGGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

196

Amino Acids

21.43

Weight (kDa)

5.09

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
AccB1I	GGYRCC	2 cut(s)	260, 356
AccII	CGCG	1 cut(s)	521
AciI	CCGC	5 cut(s)	64, 156, 473, 495, 534
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	3 cut(s)	30, 427, 434
AcyI	GRCGYC	3 cut(s)	147, 261, 492
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	9, 422
AluBI	AGCT	2 cut(s)	383, 571
AluI	AGCT	2 cut(s)	383, 571
Alw26I	GTCTC	2 cut(s)	342, 521
AlwI	GGATC	3 cut(s)	30, 427, 434
AoxI	GGCC	4 cut(s)	73, 114, 375, 408
ApeKI	GCWGC	3 cut(s)	248, 497, 506
AspLEI	GCGC	5 cut(s)	60, 207, 242, 263, 468
AspS9I	GGNCC	2 cut(s)	217, 319
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	217, 319
BanI	GGYRCC	2 cut(s)	260, 356
BbvCI	CCTCAGC	2 cut(s)	323, 552
BbvI	GCAGC	3 cut(s)	235, 484, 493
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	11, 424
BcoDI	GTCTC	2 cut(s)	342, 521
BfmI	CTRYAG	1 cut(s)	34
BfoI	RGCGCY	2 cut(s)	243, 264
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	6 cut(s)	156, 249, 495, 498, 507, 534
BlsI	GCNGC	6 cut(s)	157, 250, 496, 499, 508, 535
Bme1390I	CCNGG	2 cut(s)	11, 424
Bme18I	GGWCC	2 cut(s)	217, 319
BmgT120I	GGNCC	2 cut(s)	217, 319
BmiI	GGNNCC	3 cut(s)	262, 358, 390
BmrFI	CCNGG	2 cut(s)	11, 424
Bpu10I	CCTNAGC	2 cut(s)	323, 552
BpuEI	CTTGAG	2 cut(s)	206, 275
BsaBI	GATNNNNATC	2 cut(s)	431, 446
BsaHI	GRCGYC	3 cut(s)	147, 261, 492
BsaJI	CCNNGG	2 cut(s)	189, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	3 cut(s)	71, 236, 536
Bse8I	GATNNNNATC	2 cut(s)	431, 446
BseBI	CCWGG	2 cut(s)	11, 424
BseDI	CCNNGG	2 cut(s)	189, 579
BseGI	GGATG	1 cut(s)	447
BseJI	GATNNNNATC	2 cut(s)	431, 446
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	337, 543
BseRI	GAGGAG	2 cut(s)	206, 381
BseXI	GCAGC	3 cut(s)	235, 484, 493
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	4 cut(s)	75, 116, 377, 410
BshNI	GGYRCC	2 cut(s)	260, 356
BsiSI	CCGG	4 cut(s)	72, 237, 275, 537
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	342, 521
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	75, 116, 377, 410
Bsp143I	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	5 cut(s)	64, 156, 473, 495, 534
BspANI	GGCC	4 cut(s)	75, 116, 377, 410
BspCNI	CTCAG	2 cut(s)	336, 544
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	3 cut(s)	262, 358, 390
BspPI	GGATC	3 cut(s)	30, 427, 434
BspT107I	GGYRCC	2 cut(s)	260, 356
BsrFI	RCCGGY	3 cut(s)	71, 236, 536
BssAI	RCCGGY	3 cut(s)	71, 236, 536
BssECI	CCNNGG	2 cut(s)	189, 579
BssMI	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
BssNI	GRCGYC	3 cut(s)	147, 261, 492
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	11, 424
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	3 cut(s)	147, 261, 492
BstC8I	GCNNGC	5 cut(s)	130, 203, 287, 464, 549
BstDEI	CTNAG	3 cut(s)	228, 323, 552
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	2 cut(s)	243, 264
BstHHI	GCGC	5 cut(s)	60, 207, 242, 263, 468
BstKTI	GATC	7 cut(s)	25, 183, 198, 429, 435, 444, 480
BstMAI	GTCTC	2 cut(s)	342, 521
BstMBI	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
BstMWI	GCNNNNNNNGC	7 cut(s)	55, 72, 155, 248, 416, 503, 506
BstNI	CCWGG	2 cut(s)	11, 424
BstSCI	CCNGG	2 cut(s)	9, 422
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	235, 484, 493
BstX2I	RGATCY	2 cut(s)	432, 441
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	2 cut(s)	432, 441
BsuRI	GGCC	4 cut(s)	75, 116, 377, 410
BtgI	CCRYGG	1 cut(s)	579
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	447
Cac8I	GCNNGC	5 cut(s)	130, 203, 287, 464, 549
CfoI	GCGC	5 cut(s)	60, 207, 242, 263, 468
Cfr10I	RCCGGY	3 cut(s)	71, 236, 536
Cfr13I	GGNCC	2 cut(s)	217, 319
CseI	GACGC	3 cut(s)	155, 500, 510
CviAII	CATG	4 cut(s)	55, 452, 469, 580
DdeI	CTNAG	3 cut(s)	228, 323, 552
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	7 cut(s)	24, 182, 197, 428, 434, 443, 479
DpnII	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	217, 319
EcoO109I	RGGNCCY	2 cut(s)	217, 319
EcoRII	CCWGG	2 cut(s)	9, 422
EcoT14I	CCWWGG	1 cut(s)	579
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	4 cut(s)	58, 455, 472, 583
FaiI	YATR	5 cut(s)	56, 209, 453, 470, 581
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	4 cut(s)	54, 451, 468, 579
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	6 cut(s)	156, 249, 495, 498, 507, 534
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	6 cut(s)	156, 249, 495, 498, 507, 534
FspAI	RTGCGCAY	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	5 cut(s)	59, 206, 241, 262, 467
GluI	GCNGC	6 cut(s)	156, 249, 495, 498, 507, 534
HaeII	RGCGCY	2 cut(s)	243, 264
HaeIII	GGCC	4 cut(s)	75, 116, 377, 410
HapII	CCGG	4 cut(s)	72, 237, 275, 537
HgaI	GACGC	3 cut(s)	155, 500, 510
HhaI	GCGC	5 cut(s)	60, 207, 242, 263, 468
Hin1I	GRCGYC	3 cut(s)	147, 261, 492
Hin1II	CATG	4 cut(s)	58, 455, 472, 583
Hin6I	GCGC	5 cut(s)	58, 205, 240, 261, 466
HinP1I	GCGC	5 cut(s)	58, 205, 240, 261, 466
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	4 cut(s)	72, 237, 275, 537
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	6 cut(s)	27, 109, 176, 190, 441, 526
Hpy188III	TCNNGA	3 cut(s)	139, 301, 430
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	3 cut(s)	374, 521, 526
HpyAV	CCTTC	5 cut(s)	92, 160, 343, 370, 421
HpyCH4IV	ACGT	3 cut(s)	279, 306, 516
HpyCH4V	TGCA	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	7 cut(s)	55, 72, 155, 248, 416, 503, 506
HpyF3I	CTNAG	3 cut(s)	228, 323, 552
HpySE526I	ACGT	3 cut(s)	279, 306, 516
Hsp92I	GRCGYC	3 cut(s)	147, 261, 492
Hsp92II	CATG	4 cut(s)	58, 455, 472, 583
HspAI	GCGC	5 cut(s)	58, 205, 240, 261, 466
KasI	GGCGCC	1 cut(s)	260
Kzo9I	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	3 cut(s)	235, 484, 493
MaeII	ACGT	3 cut(s)	279, 306, 516
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	7 cut(s)	24, 182, 197, 428, 434, 443, 479
MboI	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
MboII	GAAGA	1 cut(s)	127
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	432, 441
MluCI	AATT	1 cut(s)	558
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	4 cut(s)	72, 237, 275, 537
MspR9I	CCNGG	2 cut(s)	11, 424
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	2 cut(s)	11, 424
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	7 cut(s)	55, 72, 155, 248, 416, 503, 506
NarI	GGCGCC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
NlaIII	CATG	4 cut(s)	58, 455, 472, 583
NlaIV	GGNNCC	3 cut(s)	262, 358, 390
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	6 cut(s)	157, 250, 496, 499, 508, 535
PleI	GAGTC	1 cut(s)	22
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	2 cut(s)	217, 319
Psp1406I	AACGTT	1 cut(s)	306
Psp5II	RGGWCCY	2 cut(s)	217, 319
Psp6I	CCWGG	2 cut(s)	9, 422
PspGI	CCWGG	2 cut(s)	9, 422
PspN4I	GGNNCC	3 cut(s)	262, 358, 390
PspPI	GGNCC	2 cut(s)	217, 319
PspPPI	RGGWCCY	2 cut(s)	217, 319
PsuI	RGATCY	2 cut(s)	432, 441
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	6 cut(s)	156, 249, 495, 498, 507, 534
Sau3AI	GATC	7 cut(s)	22, 180, 195, 426, 432, 441, 477
Sau96I	GGNCC	2 cut(s)	217, 319
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	11, 424
SfcI	CTRYAG	1 cut(s)	34
SfoI	GGCGCC	1 cut(s)	262
SgrAI	CRCCGGYG	1 cut(s)	536
SinI	GGWCC	2 cut(s)	217, 319
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	221, 290
SmoI	CTYRAG	2 cut(s)	221, 290
Sse9I	AATT	1 cut(s)	558
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	5 cut(s)	64, 156, 473, 495, 534
SspDI	GGCGCC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	9, 422
StyI	CCWWGG	1 cut(s)	579
TaiI	ACGT	3 cut(s)	282, 309, 519
TaqI	TCGA	3 cut(s)	123, 138, 399
TasI	AATT	1 cut(s)	558
TauI	GCSGC	3 cut(s)	158, 497, 536
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	248, 497, 506
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	403
TspGWI	ACGGA	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	217, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.