Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Reverse (-)

25987633 .. 25988268

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG120400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCGCCGACTGCTTCTACAGCCTATTCTTGCCGACCATGGTCTACCGCAACACCGCCGTGGAGCTTCTGTTCAATTTCCTCACCACTTCCGACGAGGCCGAAGTCGAGGCTCGCCTCCGCGAGGCTCGCCTCTTCGAGGAAGACGCCTTCGCCACCTCCAGAACGATTATCAGAGCGATCTACTCCGACGAGATCAGCTATCGCGTGCTGGAGGTCCTCCAGGCTAAGAACACGGGCGCTTCTGCTGCTGAAAAGGGCCCCCTGTTGTTGCCGGACGCTGGCATACGCAAGCCCTTCGTGGGCATTGTTATCGATAACCTCAGCAGTCCCTTCTCTCCCTGGAGGCACTTCGGCACCCTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCGAGAGGCCTTCTTCGCCGCCAGGGAGAAGGTCCGTAAGATCTACATCCAAGAGGTCTGCGAGCGCATGGTGGAGATCAAACACAAGAACGCCGCTGCTTCTGCTGCTGGAAACGTCGCGTCGGAGACCGCCGCCGGTGGTGTGGCTGAGGCAATTGAAAGTCAGCTAAAATCCATGGAATTAGCAGAATCCATGGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

211

Amino Acids

23.44

Weight (kDa)

4.92

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	3 cut(s)	153, 237, 551
AciI	CCGC	7 cut(s)	79, 87, 151, 450, 525, 561, 564
AclWI	GGATC	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	4 cut(s)	154, 169, 311, 332
AgsI	TTSAA	2 cut(s)	106, 590
AjnI	CCWGG	5 cut(s)	9, 252, 371, 414, 452
AleI	CACNNNNGTG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	3 cut(s)	97, 231, 598
AluI	AGCT	3 cut(s)	97, 231, 598
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	4 cut(s)	129, 289, 405, 438
ApaI	GGGCCC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	278, 527, 536
AspLEI	GCGC	3 cut(s)	38, 272, 498
AspS9I	GGNCC	4 cut(s)	247, 289, 290, 463
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	247, 463
BaeGI	GKGCMC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	180
BbvCI	CCTCAGC	2 cut(s)	353, 579
BbvI	GCAGC	3 cut(s)	265, 514, 523
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	4 cut(s)	310, 325, 344, 359
BciT130I	CCWGG	5 cut(s)	11, 254, 373, 416, 454
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	2 cut(s)	39, 273
BglII	AGATCT	1 cut(s)	471
BisI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
BlsI	GCNGC	6 cut(s)	280, 451, 526, 529, 538, 565
Bme1390I	CCNGG	5 cut(s)	11, 254, 373, 416, 454
Bme18I	GGWCC	2 cut(s)	247, 463
BmgT120I	GGNCC	4 cut(s)	247, 289, 290, 463
BmiI	GGNNCC	4 cut(s)	291, 292, 388, 420
BmrFI	CCNGG	5 cut(s)	11, 254, 373, 416, 454
BoxI	GACNNNNGTC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	4 cut(s)	175, 236, 263, 394
Bpu10I	CCTNAGC	2 cut(s)	353, 579
Bsa29I	ATCGAT	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	7 cut(s)	69, 90, 371, 414, 453, 606, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 169, 311, 332
Bse118I	RCCGGY	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	5 cut(s)	11, 254, 373, 416, 454
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	7 cut(s)	69, 90, 371, 414, 453, 606, 624
BseGI	GGATG	1 cut(s)	477
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	154, 169, 311, 332
BseMII	CTCAG	2 cut(s)	367, 570
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	3 cut(s)	265, 514, 523
Bsh1236I	CGCG	3 cut(s)	153, 237, 551
BshFI	GGCC	4 cut(s)	131, 291, 407, 440
BshNI	GGYRCC	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	305, 567
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	4 cut(s)	154, 169, 311, 332
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	4 cut(s)	131, 291, 407, 440
Bso31I	GGTCTC	1 cut(s)	551
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	5 cut(s)	22, 210, 225, 471, 507
Bsp19I	CCATGG	3 cut(s)	69, 606, 624
BspACI	CCGC	7 cut(s)	79, 87, 151, 450, 525, 561, 564
BspANI	GGCC	4 cut(s)	131, 291, 407, 440
BspCNI	CTCAG	2 cut(s)	366, 571
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	3 cut(s)	153, 237, 551
BspLI	GGNNCC	4 cut(s)	291, 292, 388, 420
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	7 cut(s)	69, 90, 371, 414, 453, 606, 624
BssMI	GATC	5 cut(s)	22, 210, 225, 471, 507
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	3 cut(s)	69, 606, 624
Bst2UI	CCWGG	5 cut(s)	11, 254, 373, 416, 454
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	6 cut(s)	145, 160, 239, 313, 323, 494
BstDEI	CTNAG	3 cut(s)	258, 353, 579
BstDSI	CCRYGG	4 cut(s)	69, 90, 606, 624
BstENI	CCTNNNNNAGG	2 cut(s)	152, 167
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	3 cut(s)	153, 237, 551
BstH2I	RGCGCY	2 cut(s)	39, 273
BstHHI	GCGC	3 cut(s)	38, 272, 498
BstKTI	GATC	5 cut(s)	25, 213, 228, 474, 510
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	5 cut(s)	22, 210, 225, 471, 507
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 51, 159, 278, 446, 533, 536
BstNI	CCWGG	5 cut(s)	11, 254, 373, 416, 454
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	5 cut(s)	9, 252, 371, 414, 452
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	3 cut(s)	153, 237, 551
BstV1I	GCAGC	3 cut(s)	265, 514, 523
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	471
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	471
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	131, 291, 407, 440
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	4 cut(s)	69, 90, 606, 624
BtsCI	GGATG	1 cut(s)	477
Cac8I	GCNNGC	6 cut(s)	145, 160, 239, 313, 323, 494
CfoI	GCGC	3 cut(s)	38, 272, 498
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	4 cut(s)	247, 289, 290, 463
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	3 cut(s)	185, 317, 540
CviAII	CATG	4 cut(s)	70, 499, 607, 625
DdeI	CTNAG	3 cut(s)	258, 353, 579
DpnI	GATC	5 cut(s)	24, 212, 227, 473, 509
DpnII	GATC	5 cut(s)	22, 210, 225, 471, 507
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	3 cut(s)	69, 606, 624
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	2 cut(s)	247, 463
EcoNI	CCTNNNNNAGG	2 cut(s)	152, 167
EcoO109I	RGGNCCY	3 cut(s)	247, 289, 290
EcoRII	CCWGG	5 cut(s)	9, 252, 371, 414, 452
EcoT14I	CCWWGG	3 cut(s)	69, 606, 624
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	3 cut(s)	69, 606, 624
FaeI	CATG	4 cut(s)	73, 502, 610, 628
FaiI	YATR	5 cut(s)	71, 317, 500, 608, 626
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	69, 498, 606, 624
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
GlaI	GCGC	3 cut(s)	37, 271, 497
GluI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
GsuI	CTGGAG	4 cut(s)	175, 236, 263, 394
HaeII	RGCGCY	2 cut(s)	39, 273
HaeIII	GGCC	4 cut(s)	131, 291, 407, 440
HapII	CCGG	2 cut(s)	305, 567
HgaI	GACGC	3 cut(s)	185, 317, 540
HhaI	GCGC	3 cut(s)	38, 272, 498
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	73, 502, 610, 628
Hin6I	GCGC	3 cut(s)	36, 270, 496
HinP1I	GCGC	3 cut(s)	36, 270, 496
HinfI	GANTC	2 cut(s)	14, 620
HpaII	CCGG	2 cut(s)	305, 567
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	5 cut(s)	27, 124, 206, 220, 556
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	5 cut(s)	128, 224, 404, 551, 556
HpyAV	CCTTC	6 cut(s)	190, 337, 373, 433, 451, 454
HpyCH4IV	ACGT	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 51, 159, 278, 446, 533, 536
HpyF3I	CTNAG	3 cut(s)	258, 353, 579
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	73, 502, 610, 628
HspAI	GCGC	3 cut(s)	36, 270, 496
Kzo9I	GATC	5 cut(s)	22, 210, 225, 471, 507
LmnI	GCTCC	2 cut(s)	94, 424
Lsp1109I	GCAGC	3 cut(s)	265, 514, 523
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	5 cut(s)	24, 212, 227, 473, 509
MboI	GATC	5 cut(s)	22, 210, 225, 471, 507
MboII	GAAGA	3 cut(s)	157, 185, 436
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	3 cut(s)	106, 585, 611
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	3 cut(s)	147, 243, 534
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	305, 567
MspR9I	CCNGG	5 cut(s)	11, 254, 373, 416, 454
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	5 cut(s)	11, 254, 373, 416, 454
MvnI	CGCG	3 cut(s)	153, 237, 551
MwoI	GCNNNNNNNGC	7 cut(s)	42, 51, 159, 278, 446, 533, 536
NcoI	CCATGG	3 cut(s)	69, 606, 624
NdeII	GATC	5 cut(s)	22, 210, 225, 471, 507
NlaIII	CATG	4 cut(s)	73, 502, 610, 628
NlaIV	GGNNCC	4 cut(s)	291, 292, 388, 420
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	620
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	6 cut(s)	280, 451, 526, 529, 538, 565
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	5 cut(s)	9, 252, 371, 414, 452
PspGI	CCWGG	5 cut(s)	9, 252, 371, 414, 452
PspN4I	GGNNCC	4 cut(s)	291, 292, 388, 420
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	4 cut(s)	247, 289, 290, 463
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	89
SatI	GCNGC	6 cut(s)	279, 450, 525, 528, 537, 564
Sau3AI	GATC	5 cut(s)	22, 210, 225, 471, 507
Sau96I	GGNCC	4 cut(s)	247, 289, 290, 463
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	5 cut(s)	11, 254, 373, 416, 454
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	9 cut(s)	99, 191, 233, 249, 354, 465, 489, 549, 600
SfcI	CTRYAG	1 cut(s)	49
SgrAI	CRCCGGYG	1 cut(s)	566
SinI	GGWCC	2 cut(s)	247, 463
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	106, 585, 611
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	7 cut(s)	79, 87, 151, 450, 525, 561, 564
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	5 cut(s)	9, 252, 371, 414, 452
StyI	CCWWGG	3 cut(s)	69, 606, 624
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	138, 168, 345, 429
TasI	AATT	3 cut(s)	106, 585, 611
TauI	GCSGC	3 cut(s)	452, 527, 566
TfiI	GAWTC	1 cut(s)	620
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	278, 527, 536
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	247, 463
XagI	CCTNNNNNAGG	2 cut(s)	152, 167
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.