Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038964.1

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Forward (+)

14177 .. 14797

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038964.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggaagtccaggagtcacaggatcggaagccgagcgccgactgcttctacagcctattcttgccgaccatggtctaccgcaacaccgccgtggagcttctgttcaatttcctcaccacttccgacgaggccgaagtcgaggctcgcctcttcgaggaagacgccttcgccacctccagaactattatcagagcgatctactccgacgagatcagctatcgcctgctggaggtcctccaggctaagaacaccggcgcttctgctgctgaaaagggccccctgttgttgccggacgttggcatacgcaagcccttcgtgggcattgttatcgatgacctcagcagtcccttctctccctggaggcacttcggcaccctctccaccgacgaggccaaagccctggctcccttcatcgagcgagaggccttcttcgccgccagggagaaggtccgtaagatctacatccaagaggtctgcgagcgcatggtggagatcaaacacaagaacgccgctgcttctgctgctggaaacgtcgcgtcggagaccgccgccggtggtgtgcttgaggcaattgaaagtcagctaaaatccatggaattagcagaatccatggattactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

206

Amino Acids

22.9

Weight (kDa)

4.77

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	536
AciI	CCGC	6 cut(s)	79, 87, 435, 510, 546, 549
AclWI	GGATC	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	4 cut(s)	154, 229, 296, 317
AgsI	TTSAA	2 cut(s)	106, 575
AjnI	CCWGG	5 cut(s)	9, 237, 356, 399, 437
AleI	CACNNNNGTG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	3 cut(s)	97, 216, 583
AluI	AGCT	3 cut(s)	97, 216, 583
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	4 cut(s)	129, 274, 390, 423
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	263, 512, 521
AspLEI	GCGC	3 cut(s)	38, 257, 483
AspS9I	GGNCC	4 cut(s)	232, 274, 275, 448
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	232, 448
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	250, 499, 508
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	4 cut(s)	295, 310, 329, 344
BciT130I	CCWGG	5 cut(s)	11, 239, 358, 401, 439
BcoDI	GTCTC	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	2 cut(s)	39, 258
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	6 cut(s)	264, 435, 510, 513, 522, 549
BlsI	GCNGC	6 cut(s)	265, 436, 511, 514, 523, 550
Bme1390I	CCNGG	5 cut(s)	11, 239, 358, 401, 439
Bme18I	GGWCC	2 cut(s)	232, 448
BmgT120I	GGNCC	4 cut(s)	232, 274, 275, 448
BmiI	GGNNCC	4 cut(s)	276, 277, 373, 405
BmrFI	CCNGG	5 cut(s)	11, 239, 358, 401, 439
BoxI	GACNNNNGTC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	4 cut(s)	160, 221, 248, 379
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	584
Bsa29I	ATCGAT	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	7 cut(s)	69, 90, 356, 399, 438, 591, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 229, 296, 317
Bse118I	RCCGGY	2 cut(s)	251, 551
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	5 cut(s)	11, 239, 358, 401, 439
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	7 cut(s)	69, 90, 356, 399, 438, 591, 609
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	4 cut(s)	154, 229, 296, 317
BseMII	CTCAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	250, 499, 508
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	4 cut(s)	131, 276, 392, 425
BshNI	GGYRCC	1 cut(s)	371
BshVI	ATCGAT	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	252, 290, 552
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	4 cut(s)	154, 229, 296, 317
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	4 cut(s)	131, 276, 392, 425
Bso31I	GGTCTC	1 cut(s)	536
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	5 cut(s)	22, 195, 210, 456, 492
Bsp19I	CCATGG	3 cut(s)	69, 591, 609
BspACI	CCGC	6 cut(s)	79, 87, 435, 510, 546, 549
BspANI	GGCC	4 cut(s)	131, 276, 392, 425
BspCNI	CTCAG	1 cut(s)	351
BspDI	ATCGAT	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	4 cut(s)	276, 277, 373, 405
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	536
BsrFI	RCCGGY	2 cut(s)	251, 551
BssAI	RCCGGY	2 cut(s)	251, 551
BssECI	CCNNGG	7 cut(s)	69, 90, 356, 399, 438, 591, 609
BssMI	GATC	5 cut(s)	22, 195, 210, 456, 492
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	3 cut(s)	69, 591, 609
Bst2UI	CCWGG	5 cut(s)	11, 239, 358, 401, 439
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	4 cut(s)	145, 224, 308, 479
BstDEI	CTNAG	2 cut(s)	243, 338
BstDSI	CCRYGG	4 cut(s)	69, 90, 591, 609
BstENI	CCTNNNNNAGG	2 cut(s)	152, 227
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	1 cut(s)	536
BstH2I	RGCGCY	2 cut(s)	39, 258
BstHHI	GCGC	3 cut(s)	38, 257, 483
BstKTI	GATC	5 cut(s)	25, 198, 213, 459, 495
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	5 cut(s)	22, 195, 210, 456, 492
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 51, 263, 431, 518, 521
BstNI	CCWGG	5 cut(s)	11, 239, 358, 401, 439
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	5 cut(s)	9, 237, 356, 399, 437
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	250, 499, 508
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	131, 276, 392, 425
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	4 cut(s)	69, 90, 591, 609
BtsCI	GGATG	1 cut(s)	462
Cac8I	GCNNGC	4 cut(s)	145, 224, 308, 479
CfoI	GCGC	3 cut(s)	38, 257, 483
Cfr10I	RCCGGY	2 cut(s)	251, 551
Cfr13I	GGNCC	4 cut(s)	232, 274, 275, 448
ClaI	ATCGAT	1 cut(s)	330
CseI	GACGC	2 cut(s)	170, 525
CviAII	CATG	4 cut(s)	70, 484, 592, 610
DdeI	CTNAG	2 cut(s)	243, 338
DpnI	GATC	5 cut(s)	24, 197, 212, 458, 494
DpnII	GATC	5 cut(s)	22, 195, 210, 456, 492
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	3 cut(s)	69, 591, 609
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	2 cut(s)	232, 448
EcoNI	CCTNNNNNAGG	2 cut(s)	152, 227
EcoO109I	RGGNCCY	3 cut(s)	232, 274, 275
EcoRII	CCWGG	5 cut(s)	9, 237, 356, 399, 437
EcoT14I	CCWWGG	3 cut(s)	69, 591, 609
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	3 cut(s)	69, 591, 609
FaeI	CATG	4 cut(s)	73, 487, 595, 613
FaiI	YATR	5 cut(s)	71, 302, 485, 593, 611
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	69, 483, 591, 609
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	264, 435, 510, 513, 522, 549
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	6 cut(s)	264, 435, 510, 513, 522, 549
GlaI	GCGC	3 cut(s)	37, 256, 482
GluI	GCNGC	6 cut(s)	264, 435, 510, 513, 522, 549
GsuI	CTGGAG	4 cut(s)	160, 221, 248, 379
HaeII	RGCGCY	2 cut(s)	39, 258
HaeIII	GGCC	4 cut(s)	131, 276, 392, 425
HapII	CCGG	3 cut(s)	252, 290, 552
HgaI	GACGC	2 cut(s)	170, 525
HhaI	GCGC	3 cut(s)	38, 257, 483
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	73, 487, 595, 613
Hin6I	GCGC	3 cut(s)	36, 255, 481
HinP1I	GCGC	3 cut(s)	36, 255, 481
HinfI	GANTC	2 cut(s)	14, 605
HpaII	CCGG	3 cut(s)	252, 290, 552
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	5 cut(s)	27, 124, 191, 205, 541
Hpy188III	TCNNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	5 cut(s)	128, 209, 389, 536, 541
HpyAV	CCTTC	6 cut(s)	175, 322, 358, 418, 436, 439
HpyCH4IV	ACGT	2 cut(s)	294, 531
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 51, 263, 431, 518, 521
HpyF3I	CTNAG	2 cut(s)	243, 338
HpySE526I	ACGT	2 cut(s)	294, 531
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	73, 487, 595, 613
HspAI	GCGC	3 cut(s)	36, 255, 481
Kzo9I	GATC	5 cut(s)	22, 195, 210, 456, 492
LmnI	GCTCC	2 cut(s)	94, 409
Lsp1109I	GCAGC	3 cut(s)	250, 499, 508
MaeII	ACGT	2 cut(s)	294, 531
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	5 cut(s)	24, 197, 212, 458, 494
MboI	GATC	5 cut(s)	22, 195, 210, 456, 492
MboII	GAAGA	3 cut(s)	142, 170, 421
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	106, 570, 596
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	3 cut(s)	147, 228, 519
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	3 cut(s)	252, 290, 552
MspR9I	CCNGG	5 cut(s)	11, 239, 358, 401, 439
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	5 cut(s)	11, 239, 358, 401, 439
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	6 cut(s)	42, 51, 263, 431, 518, 521
NcoI	CCATGG	3 cut(s)	69, 591, 609
NdeII	GATC	5 cut(s)	22, 195, 210, 456, 492
NlaIII	CATG	4 cut(s)	73, 487, 595, 613
NlaIV	GGNNCC	4 cut(s)	276, 277, 373, 405
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	6 cut(s)	265, 436, 511, 514, 523, 550
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	232
PshAI	GACNNNNGTC	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	5 cut(s)	9, 237, 356, 399, 437
PspGI	CCWGG	5 cut(s)	9, 237, 356, 399, 437
PspN4I	GGNNCC	4 cut(s)	276, 277, 373, 405
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	4 cut(s)	232, 274, 275, 448
PspPPI	RGGWCCY	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	89
SatI	GCNGC	6 cut(s)	264, 435, 510, 513, 522, 549
Sau3AI	GATC	5 cut(s)	22, 195, 210, 456, 492
Sau96I	GGNCC	4 cut(s)	232, 274, 275, 448
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	5 cut(s)	11, 239, 358, 401, 439
SduI	GDGCHC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	49
SgrAI	CRCCGGYG	2 cut(s)	251, 551
SinI	GGWCC	2 cut(s)	232, 448
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	3 cut(s)	106, 570, 596
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	6 cut(s)	79, 87, 435, 510, 546, 549
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	5 cut(s)	9, 237, 356, 399, 437
StyI	CCWWGG	3 cut(s)	69, 591, 609
TaiI	ACGT	2 cut(s)	297, 534
TaqI	TCGA	4 cut(s)	138, 153, 330, 414
TasI	AATT	3 cut(s)	106, 570, 596
TauI	GCSGC	3 cut(s)	437, 512, 551
TfiI	GAWTC	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	263, 512, 521
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	400
TspGWI	ACGGA	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	232, 448
XagI	CCTNNNNNAGG	2 cut(s)	152, 227
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.