Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Forward (+)

18419102 .. 18419659

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG116400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCTCCGACTCCACCTACAGCCTATTCTTGCCGCCCATGGGCGTCCGCAACACCGCCGTGAACCTTCTGGTCAAGATCCTCACCACTTCCGACGAGGCCGAAGTCGAGGCTCGCCTCATCGAGAAAGAAGCCTTCGCCGCCACCAGAATGATGATCCGAACGATCTACTCCGAGGAGATCAGCGATCGCATGGTGGAGGTCCTCAAGGCTAAGAACACCGGCGCTTCTGCTGCTGGAAAGGGCGCCCTGTTGTTGCCGGACGATGGCAGGCTTAAGCCCTTCGTGGGCCTTATTATCAAGACTCTCAGCAGTCCCTCCTCTCCCTTGAGACACTTCGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGCGCGAGAGGTCTTCCTCGCCGCCAAGATGGAGATCCGTAAGACCTACAACCGTGAGGTCTGCAAGCGCGTGTTGGAGATCAAACTCAAGAACGCCGCTGCTTCTGCTGCTGGAAACATCGAGTCGGAGACTGAGGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

185

Amino Acids

20.32

Weight (kDa)

6.64

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	275, 371
AccII	CGCG	3 cut(s)	416, 418, 483
AciI	CCGC	6 cut(s)	65, 79, 87, 171, 435, 510
AclWI	GGATC	4 cut(s)	30, 103, 181, 442
AcyI	GRCGYC	2 cut(s)	75, 276
AfiI	CCNNNNNNNGG	3 cut(s)	71, 296, 317
AflII	CTTAAG	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	9, 399
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	355, 536
AlwI	GGATC	4 cut(s)	30, 103, 181, 442
AoxI	GGCC	3 cut(s)	129, 319, 390
ApeKI	GCWGC	3 cut(s)	263, 512, 521
AsiSI	GCGATCGC	1 cut(s)	220
AspLEI	GCGC	4 cut(s)	257, 278, 418, 483
AspS9I	GGNCC	2 cut(s)	232, 319
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	2 cut(s)	275, 371
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	250, 499, 508
BccI	CCATC	2 cut(s)	290, 436
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	11, 401
BcoDI	GTCTC	2 cut(s)	355, 536
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	2 cut(s)	258, 279
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	7 cut(s)	65, 171, 264, 435, 510, 513, 522
BlsI	GCNGC	7 cut(s)	66, 172, 265, 436, 511, 514, 523
Bme1390I	CCNGG	2 cut(s)	11, 401
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	232, 319
BmiI	GGNNCC	3 cut(s)	277, 373, 405
BmrFI	CCNGG	2 cut(s)	11, 401
BpiI	GAAGAC	1 cut(s)	418
BpuEI	CTTGAG	3 cut(s)	221, 379, 485
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	2 cut(s)	75, 276
BsaJI	CCNNGG	3 cut(s)	69, 204, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 296, 317
Bse118I	RCCGGY	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	11, 401
BseDI	CCNNGG	3 cut(s)	69, 204, 399
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	71, 296, 317
BseMII	CTCAG	2 cut(s)	352, 537
BseRI	GAGGAG	2 cut(s)	221, 340
BseXI	GCAGC	3 cut(s)	250, 499, 508
Bsh1236I	CGCG	3 cut(s)	416, 418, 483
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	131, 321, 392
BshNI	GGYRCC	2 cut(s)	275, 371
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	252, 290
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	71, 296, 317
BsmAI	GTCTC	2 cut(s)	355, 536
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	131, 321, 392
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	6 cut(s)	65, 79, 87, 171, 435, 510
BspANI	GGCC	3 cut(s)	131, 321, 392
BspCNI	CTCAG	2 cut(s)	351, 538
BspFNI	CGCG	3 cut(s)	416, 418, 483
BspLI	GGNNCC	3 cut(s)	277, 373, 405
BspPI	GGATC	4 cut(s)	30, 103, 181, 442
BspT107I	GGYRCC	2 cut(s)	275, 371
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	3 cut(s)	69, 204, 399
BssMI	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
BssNI	GRCGYC	2 cut(s)	75, 276
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	11, 401
Bst4CI	ACNGT	1 cut(s)	467
BstACI	GRCGYC	2 cut(s)	75, 276
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	145, 302, 479
BstDEI	CTNAG	3 cut(s)	243, 338, 546
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	3 cut(s)	416, 418, 483
BstH2I	RGCGCY	2 cut(s)	258, 279
BstHHI	GCGC	4 cut(s)	257, 278, 418, 483
BstKTI	GATC	8 cut(s)	25, 111, 189, 198, 213, 220, 450, 495
BstMAI	GTCTC	2 cut(s)	355, 536
BstMBI	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 263, 518, 521
BstNI	CCWGG	2 cut(s)	11, 401
BstSCI	CCNGG	2 cut(s)	9, 399
BstSFI	CTRYAG	1 cut(s)	49
BstUI	CGCG	3 cut(s)	416, 418, 483
BstV1I	GCAGC	3 cut(s)	250, 499, 508
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	2 cut(s)	108, 447
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	2 cut(s)	108, 447
BsuRI	GGCC	3 cut(s)	131, 321, 392
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	397
Cac8I	GCNNGC	3 cut(s)	145, 302, 479
CfoI	GCGC	4 cut(s)	257, 278, 418, 483
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	232, 319
CseI	GACGC	1 cut(s)	64
CviAII	CATG	2 cut(s)	70, 223
DdeI	CTNAG	3 cut(s)	243, 338, 546
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	8 cut(s)	24, 110, 188, 197, 212, 219, 449, 494
DpnII	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	9, 399
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	38
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	73, 226
FaiI	YATR	2 cut(s)	71, 224
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	2 cut(s)	69, 222
Fnu4HI	GCNGC	7 cut(s)	65, 171, 264, 435, 510, 513, 522
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	7 cut(s)	65, 171, 264, 435, 510, 513, 522
GlaI	GCGC	4 cut(s)	256, 277, 417, 482
GluI	GCNGC	7 cut(s)	65, 171, 264, 435, 510, 513, 522
HaeII	RGCGCY	2 cut(s)	258, 279
HaeIII	GGCC	3 cut(s)	131, 321, 392
HapII	CCGG	2 cut(s)	252, 290
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	4 cut(s)	257, 278, 418, 483
Hin1I	GRCGYC	2 cut(s)	75, 276
Hin1II	CATG	2 cut(s)	73, 226
Hin6I	GCGC	4 cut(s)	255, 276, 416, 481
HinP1I	GCGC	4 cut(s)	255, 276, 416, 481
HinfI	GANTC	4 cut(s)	14, 41, 334, 536
HpaII	CCGG	2 cut(s)	252, 290
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	6 cut(s)	27, 40, 124, 191, 205, 541
Hpy188III	TCNNGA	4 cut(s)	106, 154, 331, 502
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	128, 389
HpyAV	CCTTC	5 cut(s)	107, 175, 322, 385, 418
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 263, 518, 521
HpyF3I	CTNAG	3 cut(s)	243, 338, 546
Hsp92I	GRCGYC	2 cut(s)	75, 276
Hsp92II	CATG	2 cut(s)	73, 226
HspAI	GCGC	4 cut(s)	255, 276, 416, 481
KasI	GGCGCC	1 cut(s)	275
Kzo9I	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
LmnI	GCTCC	2 cut(s)	41, 409
Lsp1109I	GCAGC	3 cut(s)	250, 499, 508
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	8 cut(s)	24, 110, 188, 197, 212, 219, 449, 494
MboI	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
MboII	GAAGA	1 cut(s)	418
MflI	RGATCY	2 cut(s)	108, 447
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	551
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	4 cut(s)	23, 35, 328, 545
MmeI	TCCRAC	4 cut(s)	63, 147, 468, 519
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	2 cut(s)	89, 179
MspA1I	CMGCKG	1 cut(s)	512
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	2 cut(s)	252, 290
MspR9I	CCNGG	2 cut(s)	11, 401
MvaI	CCWGG	2 cut(s)	11, 401
MvnI	CGCG	3 cut(s)	416, 418, 483
MwoI	GCNNNNNNNGC	4 cut(s)	170, 263, 518, 521
NarI	GGCGCC	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
NlaIII	CATG	2 cut(s)	73, 226
NlaIV	GGNNCC	3 cut(s)	277, 373, 405
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	7 cut(s)	66, 172, 265, 436, 511, 514, 523
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	4 cut(s)	22, 35, 328, 544
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	4 cut(s)	22, 35, 328, 544
PpuMI	RGGWCCY	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	9, 399
PspGI	CCWGG	2 cut(s)	9, 399
PspN4I	GGNNCC	3 cut(s)	277, 373, 405
PspPI	GGNCC	2 cut(s)	232, 319
PspPPI	RGGWCCY	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	108, 447
PvuI	CGATCG	1 cut(s)	220
RgaI	GCGATCGC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	89, 179
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	7 cut(s)	65, 171, 264, 435, 510, 513, 522
Sau3AI	GATC	8 cut(s)	22, 108, 186, 195, 210, 217, 447, 492
Sau96I	GGNCC	2 cut(s)	232, 319
SchI	GAGTC	4 cut(s)	23, 35, 328, 545
ScrFI	CCNGG	2 cut(s)	11, 401
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	38, 50, 99, 234, 377, 426, 461, 474
SfaAI	GCGATCGC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	49
SfoI	GGCGCC	1 cut(s)	277
SgfI	GCGATCGC	1 cut(s)	220
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	89, 179
SmlI	CTYRAG	4 cut(s)	236, 305, 358, 500
SmoI	CTYRAG	4 cut(s)	236, 305, 358, 500
Sse9I	AATT	1 cut(s)	551
SsiI	CCGC	6 cut(s)	65, 79, 87, 171, 435, 510
SspDI	GGCGCC	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	9, 399
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	3 cut(s)	138, 153, 534
TasI	AATT	1 cut(s)	551
TauI	GCSGC	4 cut(s)	67, 173, 437, 512
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	263, 512, 521
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	400
TspGWI	ACGGA	1 cut(s)	440
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.