Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013495.1

Orthogroup ID

OG0011624

Physical Location & Seq

Genomic Coordinates Reverse (-)

15190 .. 15804

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggaagtccaggagtcacaggatcggaagccgagctccgactccatcatccacagcctattcttgccgaccatggtcttccgcaacaccgccgtggaccttctgttcaatttcctctccacttccgacgaggccgaagtcaaggctcgccttttcgaggaagacgccttcgccgtctccagaacggttatcggagcgatctactccgacgagatcagcgatcgcgtgatggaggtcctcaaggctaagaacaccggcgcttctgctgctgaaaagggcgccctgttgttgccggaagttggcgtgcgcaagcccttcgtgggcattattatcaagaacctcagcagtccctcctctccctggaggcactacggcaccttctccaccgacgaggccaaagccctggctcccttcatcgagcgagaggccttcttcgccgccagggagaagatccgcgagatctacatcgaggaggtctgcaagcgcatgttcgagatcaaacacaagaacgccgctgctggaaacgtcgcgtcggagaccgccgccggtggtgtgcctgaggcaattgaaagtcagctaaaatccatggaattagcagaatccatggattactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

204

Amino Acids

22.56

Weight (kDa)

5.06

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011624)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008642 RLG00000008921 RLG00000009136
rosa_multiflora	Rmu_sc0000771.1_g000001 Rmu_sc0013495.1_g000001 Rmu_sc0038964.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352060 Rroxscaffold_5G00354130
rosa_rugosa	Rorug04G0075600 Rorug04G0095200
rosa_samantha	Rh4AG120400 Rh4BG142400 Rh4BG156300 Rh4BG156400 Rh4CG128600 Rh4DG113000 Rh4DG116400 Rh4DG138400 Rh4DG150400 Rh4DG150600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	308
AccB1I	GGYRCC	2 cut(s)	278, 374
AccII	CGCG	3 cut(s)	225, 456, 530
AciI	CCGC	7 cut(s)	82, 90, 438, 454, 513, 540, 543
AclWI	GGATC	2 cut(s)	30, 445
AcyI	GRCGYC	2 cut(s)	165, 279
AfiI	CCNNNNNNNGG	4 cut(s)	157, 299, 320, 360
AgsI	TTSAA	2 cut(s)	109, 569
AjnI	CCWGG	4 cut(s)	9, 359, 402, 440
AleI	CACNNNNGTG	1 cut(s)	92
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	2 cut(s)	36, 577
AluI	AGCT	2 cut(s)	36, 577
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	181, 530
AlwI	GGATC	2 cut(s)	30, 445
AoxI	GGCC	3 cut(s)	132, 393, 426
ApeKI	GCWGC	2 cut(s)	266, 515
AsiSI	GCGATCGC	1 cut(s)	223
AspLEI	GCGC	4 cut(s)	260, 281, 309, 486
AspS9I	GGNCC	2 cut(s)	97, 235
AvaII	GGWCC	2 cut(s)	97, 235
AxyI	CCTNAGG	1 cut(s)	558
BanI	GGYRCC	2 cut(s)	278, 374
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	70, 168
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	253, 502
BccI	CCATC	2 cut(s)	53, 223
BceAI	ACGGC	3 cut(s)	77, 158, 388
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	4 cut(s)	11, 361, 404, 442
BcoDI	GTCTC	2 cut(s)	181, 530
BfoI	RGCGCY	2 cut(s)	261, 282
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	5 cut(s)	267, 438, 513, 516, 543
BlsI	GCNGC	5 cut(s)	268, 439, 514, 517, 544
Bme1390I	CCNGG	4 cut(s)	11, 361, 404, 442
Bme18I	GGWCC	2 cut(s)	97, 235
BmgT120I	GGNCC	2 cut(s)	97, 235
BmiI	GGNNCC	3 cut(s)	280, 376, 408
BmrFI	CCNGG	4 cut(s)	11, 361, 404, 442
BoxI	GACNNNNGTC	1 cut(s)	74
BpiI	GAAGAC	2 cut(s)	70, 168
BpmI	CTGGAG	2 cut(s)	163, 382
Bpu10I	CCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	464
BsaHI	GRCGYC	2 cut(s)	165, 279
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	7 cut(s)	72, 93, 359, 402, 441, 585, 603
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 299, 320, 360
Bse118I	RCCGGY	2 cut(s)	254, 545
Bse21I	CCTNAGG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	464
BseBI	CCWGG	4 cut(s)	11, 361, 404, 442
BseDI	CCNNGG	7 cut(s)	72, 93, 359, 402, 441, 585, 603
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	4 cut(s)	157, 299, 320, 360
BseMII	CTCAG	2 cut(s)	355, 549
BseRI	GAGGAG	2 cut(s)	343, 485
BseXI	GCAGC	2 cut(s)	253, 502
Bsh1236I	CGCG	3 cut(s)	225, 456, 530
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	134, 395, 428
BshNI	GGYRCC	2 cut(s)	278, 374
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	255, 293, 546
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	4 cut(s)	157, 299, 320, 360
BsmAI	GTCTC	2 cut(s)	181, 530
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	134, 395, 428
Bso31I	GGTCTC	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
Bsp19I	CCATGG	3 cut(s)	72, 585, 603
BspACI	CCGC	7 cut(s)	82, 90, 438, 454, 513, 540, 543
BspANI	GGCC	3 cut(s)	134, 395, 428
BspCNI	CTCAG	2 cut(s)	354, 550
BspFNI	CGCG	3 cut(s)	225, 456, 530
BspLI	GGNNCC	3 cut(s)	280, 376, 408
BspPI	GGATC	2 cut(s)	30, 445
BspT107I	GGYRCC	2 cut(s)	278, 374
BspTNI	GGTCTC	1 cut(s)	530
BsrFI	RCCGGY	2 cut(s)	254, 545
BssAI	RCCGGY	2 cut(s)	254, 545
BssECI	CCNNGG	7 cut(s)	72, 93, 359, 402, 441, 585, 603
BssMI	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
BssNI	GRCGYC	2 cut(s)	165, 279
BssT1I	CCWWGG	3 cut(s)	72, 585, 603
Bst2UI	CCWGG	4 cut(s)	11, 361, 404, 442
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	2 cut(s)	165, 279
BstC8I	GCNNGC	4 cut(s)	148, 305, 311, 482
BstDEI	CTNAG	3 cut(s)	246, 341, 558
BstDSI	CCRYGG	4 cut(s)	72, 93, 585, 603
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	3 cut(s)	225, 456, 530
BstH2I	RGCGCY	2 cut(s)	261, 282
BstHHI	GCGC	4 cut(s)	260, 281, 309, 486
BstKTI	GATC	7 cut(s)	25, 201, 216, 223, 453, 462, 498
BstMAI	GTCTC	2 cut(s)	181, 530
BstMBI	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 434
BstNI	CCWGG	4 cut(s)	11, 361, 404, 442
BstNSI	RCATGY	1 cut(s)	490
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSCI	CCNGG	4 cut(s)	9, 359, 402, 440
BstUI	CGCG	3 cut(s)	225, 456, 530
BstV1I	GCAGC	2 cut(s)	253, 502
BstV2I	GAAGAC	2 cut(s)	70, 168
BstX2I	RGATCY	2 cut(s)	450, 459
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	2 cut(s)	450, 459
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	134, 395, 428
BtgI	CCRYGG	4 cut(s)	72, 93, 585, 603
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	4 cut(s)	148, 305, 311, 482
CfoI	GCGC	4 cut(s)	260, 281, 309, 486
Cfr10I	RCCGGY	2 cut(s)	254, 545
Cfr13I	GGNCC	2 cut(s)	97, 235
CseI	GACGC	2 cut(s)	173, 519
CviAII	CATG	4 cut(s)	73, 487, 586, 604
DdeI	CTNAG	3 cut(s)	246, 341, 558
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	7 cut(s)	24, 200, 215, 222, 452, 461, 497
DpnII	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	3 cut(s)	72, 585, 603
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	2 cut(s)	97, 235
Eco53kI	GAGCTC	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	4 cut(s)	9, 359, 402, 440
EcoT14I	CCWWGG	3 cut(s)	72, 585, 603
EcoT38I	GRGCYC	1 cut(s)	38
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
ErhI	CCWWGG	3 cut(s)	72, 585, 603
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	4 cut(s)	76, 490, 589, 607
FaiI	YATR	4 cut(s)	74, 488, 587, 605
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	4 cut(s)	72, 486, 585, 603
Fnu4HI	GCNGC	5 cut(s)	267, 438, 513, 516, 543
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	267, 438, 513, 516, 543
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	4 cut(s)	259, 280, 308, 485
GluI	GCNGC	5 cut(s)	267, 438, 513, 516, 543
GsuI	CTGGAG	2 cut(s)	163, 382
HaeII	RGCGCY	2 cut(s)	261, 282
HaeIII	GGCC	3 cut(s)	134, 395, 428
HapII	CCGG	3 cut(s)	255, 293, 546
HgaI	GACGC	2 cut(s)	173, 519
HhaI	GCGC	4 cut(s)	260, 281, 309, 486
Hin1I	GRCGYC	2 cut(s)	165, 279
Hin1II	CATG	4 cut(s)	76, 490, 589, 607
Hin6I	GCGC	4 cut(s)	258, 279, 307, 484
HinP1I	GCGC	4 cut(s)	258, 279, 307, 484
HinfI	GANTC	3 cut(s)	14, 41, 599
HpaII	CCGG	3 cut(s)	255, 293, 546
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	27, 40, 127, 194, 208, 535
Hpy188III	TCNNGA	3 cut(s)	180, 334, 493
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	5 cut(s)	131, 212, 392, 530, 535
HpyAV	CCTTC	6 cut(s)	110, 178, 325, 388, 421, 439
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 434
HpyF3I	CTNAG	3 cut(s)	246, 341, 558
HpySE526I	ACGT	1 cut(s)	525
Hsp92I	GRCGYC	2 cut(s)	165, 279
Hsp92II	CATG	4 cut(s)	76, 490, 589, 607
HspAI	GCGC	4 cut(s)	258, 279, 307, 484
KasI	GGCGCC	1 cut(s)	278
Kzo9I	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
LmnI	GCTCC	3 cut(s)	41, 194, 412
Lsp1109I	GCAGC	2 cut(s)	253, 502
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	7 cut(s)	24, 200, 215, 222, 452, 461, 497
MboI	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
MboII	GAAGA	4 cut(s)	70, 173, 424, 460
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	450, 459
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	3 cut(s)	109, 564, 590
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	23, 35
MmeI	TCCRAC	4 cut(s)	63, 150, 231, 513
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	255, 293, 546
MspR9I	CCNGG	4 cut(s)	11, 361, 404, 442
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	4 cut(s)	11, 361, 404, 442
MvnI	CGCG	3 cut(s)	225, 456, 530
MwoI	GCNNNNNNNGC	2 cut(s)	266, 434
NarI	GGCGCC	1 cut(s)	279
NcoI	CCATGG	3 cut(s)	72, 585, 603
NdeII	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
NlaIII	CATG	4 cut(s)	76, 490, 589, 607
NlaIV	GGNNCC	3 cut(s)	280, 376, 408
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	308
NspI	RCATGY	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 216
PfeI	GAWTC	1 cut(s)	599
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	5 cut(s)	268, 439, 514, 517, 544
Ple19I	CGATCG	1 cut(s)	223
PleI	GAGTC	2 cut(s)	22, 35
PluTI	GGCGCC	1 cut(s)	282
PpsI	GAGTC	2 cut(s)	22, 35
PpuMI	RGGWCCY	1 cut(s)	235
PshAI	GACNNNNGTC	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	4 cut(s)	9, 359, 402, 440
PspGI	CCWGG	4 cut(s)	9, 359, 402, 440
PspN4I	GGNNCC	3 cut(s)	280, 376, 408
PspPI	GGNCC	2 cut(s)	97, 235
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	450, 459
PvuI	CGATCG	1 cut(s)	223
RgaI	GCGATCGC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	5 cut(s)	267, 438, 513, 516, 543
Sau3AI	GATC	7 cut(s)	22, 198, 213, 220, 450, 459, 495
Sau96I	GGNCC	2 cut(s)	97, 235
SchI	GAGTC	2 cut(s)	23, 35
ScrFI	CCNGG	4 cut(s)	11, 361, 404, 442
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	38, 102, 237, 342, 380, 477, 528, 579
SfaAI	GCGATCGC	1 cut(s)	223
SfoI	GGCGCC	1 cut(s)	280
SgfI	GCGATCGC	1 cut(s)	223
SgrAI	CRCCGGYG	2 cut(s)	254, 545
SinI	GGWCC	2 cut(s)	97, 235
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	109, 564, 590
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	7 cut(s)	82, 90, 438, 454, 513, 540, 543
SspDI	GGCGCC	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	4 cut(s)	9, 359, 402, 440
StyI	CCWWGG	3 cut(s)	72, 585, 603
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	4 cut(s)	156, 417, 468, 492
TasI	AATT	3 cut(s)	109, 564, 590
TauI	GCSGC	3 cut(s)	440, 515, 545
TfiI	GAWTC	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	266, 515
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	403
VpaK11BI	GGWCC	2 cut(s)	97, 235
XagI	CCTNNNNNAGG	1 cut(s)	155
XceI	RCATGY	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.