Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010614

Physical Location & Seq

Genomic Coordinates Reverse (-)

61555936 .. 61558152

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTCTGTCCTTTCGCTCATTTCGATAAGATTAGACAACGTGGTTTTAAGACTGTTTACTATGCCGAGCTGAGAAGTGAGGATGATACTCAAATTGTGACAGCTTCTGGTGATCAATCTTTTAAGGTGTCAGATATTCAGGGAAAGAAATATTCTGTATCCAAGCAGGTCTGCCATTACCCTGATCCTGTAACAAGTTTAAGGAAAGCGGGGCTCAATTTGCACAGGAACATATTGCCCCCACATGGAAACTCATGGGAGAGTTTAATCGATCTTCTTGGAATTACTGCCTCAGGTACCATTTTCATGTATCATGGAGGAGCGAATTTTGGCCGAAGTCCTGCTGGTCCCTCCATTGCAACTAATTTTGACTATGATGCACCCCTAGATGAATATGGGGAATTGGTTGTAAACCTAACATCATCTTCCATGAAGTCTGTTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

6.5

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	94 - 135	4.5e-09	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821
rosa_laevigata	RLG00000009993
rosa_multiflora	Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234660 Rroxscaffold_5G00342370
rosa_rugosa	Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100
rosa_samantha	Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	245
AluBI	AGCT	2 cut(s)	70, 104
AluI	AGCT	2 cut(s)	70, 104
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	325
Asp718I	GGTACC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	216
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	112
BfaI	CTAG	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	298, 349
BmsI	GCATC	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	270
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	62, 306
BseRI	GAGGAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	112, 184, 271
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	63, 305
BspDI	ATCGAT	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	298, 349
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	354
BssMI	GATC	3 cut(s)	112, 184, 271
Bst4CI	ACNGT	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	71, 292
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	3 cut(s)	115, 187, 274
BstMBI	GATC	3 cut(s)	112, 184, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	220
Bsu15I	ATCGAT	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	5 cut(s)	245, 255, 307, 314, 430
CviJI	RGCY	4 cut(s)	70, 104, 214, 333
CviKI_1	RGCY	4 cut(s)	70, 104, 214, 333
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	71, 292
DpnI	GATC	3 cut(s)	114, 186, 273
DpnII	GATC	3 cut(s)	112, 184, 271
EaeI	YGGCCR	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	5 cut(s)	248, 258, 310, 317, 433
FaiI	YATR	9 cut(s)	63, 233, 246, 256, 308, 315, 375, 396, 431
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	5 cut(s)	244, 254, 306, 313, 429
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	216
FspBI	CTAG	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	5 cut(s)	248, 258, 310, 317, 433
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	58, 412
Hpy188I	TCNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	58, 412
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	223, 359, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	71, 292
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	5 cut(s)	248, 258, 310, 317, 433
KpnI	GGTACC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	112, 184, 271
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	9 cut(s)	93, 125, 152, 195, 201, 211, 279, 330, 354
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	3 cut(s)	97, 190, 439
MalI	GATC	3 cut(s)	114, 186, 273
MboI	GATC	3 cut(s)	112, 184, 271
MboII	GAAGA	2 cut(s)	266, 417
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	6 cut(s)	93, 217, 282, 325, 364, 401
MnlI	CCTC	4 cut(s)	73, 301, 311, 361
MseI	TTAA	4 cut(s)	48, 123, 200, 266
MslI	CAYNNNNRTG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	3 cut(s)	112, 184, 271
NlaIII	CATG	5 cut(s)	248, 258, 310, 317, 433
NlaIV	GGNNCC	2 cut(s)	298, 349
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	298, 349
PspPI	GGNCC	1 cut(s)	347
PstNI	CAGNNNCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	48, 123, 200, 266
Sau3AI	GATC	3 cut(s)	112, 184, 271
Sau96I	GGNCC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	8 cut(s)	43, 72, 106, 129, 171, 298, 417, 446
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	6 cut(s)	93, 217, 282, 325, 364, 401
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	24, 270
TasI	AATT	6 cut(s)	93, 217, 282, 325, 364, 401
Tru1I	TTAA	4 cut(s)	48, 123, 200, 266
Tru9I	TTAA	4 cut(s)	48, 123, 200, 266
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	295, 405, 446
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	325
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.