Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010614

Physical Location & Seq

Genomic Coordinates Reverse (-)

57014117 .. 57016598

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0443800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCAGGTATGATGGGAGCTACAGAATTGAGATTCCCAGCAATGGAGCTTCTCCTCGGTAATGCCTTAATGTTCACTACACCTTTGAATGCTTTGGCAGAAACATGTGAGGCCGACAACTCTTTTTTCAACATGCCTCTGCTACTATCTGTTGCCCTTGTAGGGGCCACTGTTGGTGGGCTGGTTGCCCGGCAAAGGAAAGGGGAATTACAACGAGTGAACGAACAGTTACGACAAATTAATGCTGCTCTGAGAAGACAAGCTAAGATCGAATCATATGCTCCCACTTTGAGCTATGCACCTAGTGGAAGAATACCAGAGAGCGAGGTTATAATTGATCCAAGGAAGCATGAGTTGATTTCTCGATTGAAGGCTGGGAAAAACTTTCTGAGAAACCAAGAACCACAGAAAGCATCTACTGAGTTTAAGGCAGCTCTGGAGCTTGCTCAAAGTTTGAAGGACTCAATTGAGGAGAAGAAGGCTGCAAGGGGTCTAGGAGCCTCACTACAAAGACAGGGCCAATATCGAGATGCCATTAAGTACCATTCTATGGTTTTGGCAATCTCCGAGCGAGAAGGAGAAGACTCGGGAAACACAGAAGCTTATGGAGCAATTGCTGATTGTTATACCGAGCTTGGAGATCTTGAGAGCGCAGGGAAGTTCTATGACAATTATATTGCAAGGTTGGAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

232

Amino Acids

25.56

Weight (kDa)

5.88

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	128 - 190	8.9e-08	Tetratricopeptide repeat
TPR_12	PF13424	162 - 228	6.4e-10	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821
rosa_laevigata	RLG00000009993
rosa_multiflora	Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234660 Rroxscaffold_5G00342370
rosa_rugosa	Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100
rosa_samantha	Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	550
AclWI	GGATC	1 cut(s)	332
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	5 cut(s)	43, 162, 163, 195, 550
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	88, 130, 370, 457
AluBI	AGCT	8 cut(s)	20, 49, 263, 294, 434, 442, 602, 634
AluI	AGCT	8 cut(s)	20, 49, 263, 294, 434, 442, 602, 634
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	3 cut(s)	111, 165, 517
ApeKI	GCWGC	3 cut(s)	245, 431, 482
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	165, 517
AsuC2I	CCSGG	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	586
BbsI	GAAGAC	2 cut(s)	262, 588
BbvI	GCAGC	3 cut(s)	232, 443, 469
BccI	CCATC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcnI	CCSGG	1 cut(s)	190
BfaI	CTAG	2 cut(s)	303, 494
BfmI	CTRYAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	3 cut(s)	246, 432, 483
BlsI	GCNGC	3 cut(s)	247, 433, 484
Bme1390I	CCNGG	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	165, 517
BmiI	GGNNCC	2 cut(s)	166, 499
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	422, 520
BpiI	GAAGAC	2 cut(s)	262, 588
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	55, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 162, 163, 195, 550
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	55, 341
BseLI	CCNNNNNNNGG	5 cut(s)	43, 162, 163, 195, 550
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	242, 380, 411
BseRI	GAGGAG	2 cut(s)	44, 485
BseXI	GCAGC	3 cut(s)	232, 443, 469
BseYI	CCCAGC	2 cut(s)	37, 374
BshFI	GGCC	3 cut(s)	113, 167, 519
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	5 cut(s)	43, 162, 163, 195, 550
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	113, 167, 519
BsoBI	CYCGRG	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	267, 337, 640
BspANI	GGCC	3 cut(s)	113, 167, 519
BspCNI	CTCAG	3 cut(s)	243, 381, 412
BspLI	GGNNCC	2 cut(s)	166, 499
BspPI	GGATC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	55, 341
BssMI	GATC	3 cut(s)	267, 337, 640
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	172, 228
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	4 cut(s)	251, 264, 389, 420
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	3 cut(s)	270, 340, 643
BstMBI	GATC	3 cut(s)	267, 337, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstNSI	RCATGY	2 cut(s)	108, 136
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	232, 443, 469
BstV2I	GAAGAC	2 cut(s)	262, 588
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	113, 167, 519
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	165, 517
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	3 cut(s)	105, 133, 350
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	251, 264, 389, 420
DpnI	GATC	3 cut(s)	269, 339, 642
DpnII	GATC	3 cut(s)	267, 337, 640
DraIII	CACNNNGTG	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	108, 136, 353
FatI	CATG	3 cut(s)	104, 132, 349
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	246, 432, 483
Fsp4HI	GCNGC	3 cut(s)	246, 432, 483
FspBI	CTAG	2 cut(s)	303, 494
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	3 cut(s)	246, 432, 483
GsaI	CCCAGC	2 cut(s)	41, 378
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	113, 167, 519
HapII	CCGG	1 cut(s)	190
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	3 cut(s)	108, 136, 353
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	4 cut(s)	33, 272, 461, 584
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	75, 220
Hpy188I	TCNGA	3 cut(s)	252, 390, 568
Hpy188III	TCNNGA	5 cut(s)	363, 437, 527, 588, 644
Hpy8I	GTNNAC	2 cut(s)	75, 220
HpyAV	CCTTC	4 cut(s)	364, 451, 472, 569
HpyCH4III	ACNGT	2 cut(s)	172, 228
HpyCH4V	TGCA	3 cut(s)	299, 485, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	4 cut(s)	251, 264, 389, 420
Hsp92II	CATG	3 cut(s)	108, 136, 353
HspAI	GCGC	1 cut(s)	651
Kzo9I	GATC	3 cut(s)	267, 337, 640
LmnI	GCTCC	6 cut(s)	17, 46, 286, 439, 497, 608
LpnPI	CCDG	8 cut(s)	51, 167, 203, 330, 360, 422, 500, 639
Lsp1109I	GCAGC	3 cut(s)	232, 443, 469
LweI	GCATC	2 cut(s)	422, 520
MaeI	CTAG	2 cut(s)	303, 494
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	3 cut(s)	269, 339, 642
MboI	GATC	3 cut(s)	267, 337, 640
MboII	GAAGA	4 cut(s)	267, 321, 487, 593
MfeI	CAATTG	2 cut(s)	465, 612
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	7 cut(s)	26, 206, 237, 333, 465, 612, 670
MlyI	GAGTC	2 cut(s)	455, 578
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	6 cut(s)	65, 103, 147, 319, 463, 511
MseI	TTAA	5 cut(s)	68, 240, 426, 537, 697
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	2 cut(s)	465, 612
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	608
NciI	CCSGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	3 cut(s)	267, 337, 640
NlaIII	CATG	3 cut(s)	108, 136, 353
NlaIV	GGNNCC	2 cut(s)	166, 499
NspI	RCATGY	2 cut(s)	108, 136
PciI	ACATGT	1 cut(s)	104
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	33, 272
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	247, 433, 484
PleI	GAGTC	2 cut(s)	455, 578
PpsI	GAGTC	2 cut(s)	455, 578
PscI	ACATGT	1 cut(s)	104
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	332
PspFI	CCCAGC	2 cut(s)	37, 374
PspN4I	GGNNCC	2 cut(s)	166, 499
PspPI	GGNCC	2 cut(s)	165, 517
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
SaqAI	TTAA	5 cut(s)	68, 240, 426, 537, 697
SatI	GCNGC	3 cut(s)	246, 432, 483
Sau3AI	GATC	3 cut(s)	267, 337, 640
Sau96I	GGNCC	2 cut(s)	165, 517
SchI	GAGTC	2 cut(s)	455, 578
ScrFI	CCNGG	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	422, 520
SfcI	CTRYAG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	7 cut(s)	26, 206, 237, 333, 465, 612, 670
SspMI	CTAG	2 cut(s)	303, 494
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	172, 228
TaqI	TCGA	3 cut(s)	270, 364, 526
TasI	AATT	7 cut(s)	26, 206, 237, 333, 465, 612, 670
TfiI	GAWTC	2 cut(s)	33, 272
Tru1I	TTAA	5 cut(s)	68, 240, 426, 537, 697
Tru9I	TTAA	5 cut(s)	68, 240, 426, 537, 697
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	3 cut(s)	245, 431, 482
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	550
VspI	ATTAAT	1 cut(s)	240
XceI	RCATGY	2 cut(s)	108, 136
XspI	CTAG	2 cut(s)	303, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.