Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010614

Physical Location & Seq

Genomic Coordinates Reverse (-)

23528826 .. 23582981

Gene Structure 54156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG247300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTACAGAAGGACATCGGACACCGACAGAAGCCTGAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAGATCCGGTTTCTTTCACAGAAGGATGATACTAAAATTGTGACAGCTTCTGGTGATCAAACTGTTAAGGTATGGGATATCAGGAAAAGAAGGTATGGGATATCAGGAAAAGAAATGTACTGCAGTTCTAATGATTCTGTATGCAAGCAGGTCTGCCATTACGCTGATCCTGTAACAAGTTTTAACATTGCACCAGACTTGATGAATCAAGCAAAAGATTATTTGAACAAAACTGTGTTTGTTATATTGTTGGCTAGAGCCGAAGCTATTATTGAAAGGGTTATACTGAAGGGTGCAAAACCTGATGCAAAGTCATGGTATTCTTTTGCAAAAGTGCATCCTGATCATGATCAAACTGAGAAGGCAATTGAGTTGACGAGAAAAGCACTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACACGGATGTTTGGGCTGCTTGTCTCAACGACTTGATAAAGAAACCTGATCCAGAGGGTGCCAAGGAATATATAAAGCTCCTCACTGATGAGAATGTTATCACCGTGATTACACCAGAGAGACTGTTGAATAAGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

210

Amino Acids

23.86

Weight (kDa)

8.9

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821
rosa_laevigata	RLG00000009993
rosa_multiflora	Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234660 Rroxscaffold_5G00342370
rosa_rugosa	Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100
rosa_samantha	Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	548
AclWI	GGATC	3 cut(s)	70, 233, 533
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	6, 191
AgsI	TTSAA	4 cut(s)	53, 298, 347, 619
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	3 cut(s)	119, 338, 568
AluI	AGCT	3 cut(s)	119, 338, 568
Alw26I	GTCTC	2 cut(s)	518, 604
AlwI	GGATC	3 cut(s)	70, 233, 533
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	472, 506
AsuHPI	GGTGA	2 cut(s)	137, 583
BanI	GGYRCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	484, 493
BciT130I	CCWGG	1 cut(s)	477
BclI	TGATCA	3 cut(s)	127, 415, 421
BcoDI	GTCTC	2 cut(s)	518, 604
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	473, 507
BlsI	GCNGC	2 cut(s)	474, 508
Bme1390I	CCNGG	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	367, 418
BpiI	GAAGAC	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	3 cut(s)	103, 409, 502
BseJI	GATNNNNATC	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	27, 420
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	484, 493
BsgI	GTGCAG	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	79
BsmAI	GTCTC	2 cut(s)	518, 604
Bsp143I	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
BspCNI	CTCAG	2 cut(s)	28, 421
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	550
BspMAI	CTGCAG	1 cut(s)	197
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	3 cut(s)	70, 233, 533
BspT107I	GGYRCC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	4 cut(s)	136, 307, 595, 615
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	36, 45, 429
BstF5I	GGATG	3 cut(s)	103, 409, 502
BstKTI	GATC	6 cut(s)	78, 130, 241, 418, 424, 541
BstMAI	GTCTC	2 cut(s)	518, 604
BstMBI	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	484, 493
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	103, 409, 502
BtsIMutI	CAGTG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	218
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	5, 190
CviAII	CATG	2 cut(s)	387, 419
CviQI	GTAC	2 cut(s)	5, 190
DdeI	CTNAG	3 cut(s)	36, 45, 429
DpnI	GATC	6 cut(s)	77, 129, 240, 417, 423, 540
DpnII	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
Eco130I	CCWWGG	1 cut(s)	552
Eco32I	GATATC	2 cut(s)	151, 174
Eco57I	CTGAAG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	475
EcoRV	GATATC	2 cut(s)	151, 174
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	2 cut(s)	390, 422
FaiI	YATR	9 cut(s)	145, 168, 214, 317, 356, 388, 420, 561, 563
FatI	CATG	2 cut(s)	386, 418
FbaI	TGATCA	3 cut(s)	127, 415, 421
Fnu4HI	GCNGC	2 cut(s)	473, 507
FokI	GGATG	3 cut(s)	110, 396, 509
Fsp4HI	GCNGC	2 cut(s)	473, 507
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	2 cut(s)	473, 507
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	2 cut(s)	390, 422
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	2 cut(s)	206, 277
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	2 cut(s)	137, 583
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	5 cut(s)	154, 177, 413, 419, 542
Hpy8I	GTNNAC	1 cut(s)	447
HpyAV	CCTTC	5 cut(s)	4, 88, 156, 355, 427
HpyCH4III	ACNGT	4 cut(s)	136, 307, 595, 615
HpyCH4V	TGCA	8 cut(s)	195, 216, 263, 368, 380, 401, 409, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	3 cut(s)	36, 45, 429
Hsp92II	CATG	2 cut(s)	390, 422
Ksp22I	TGATCA	3 cut(s)	127, 415, 421
Kzo9I	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
LmnI	GCTCC	2 cut(s)	63, 573
Lsp1109I	GCAGC	2 cut(s)	484, 493
LweI	GCATC	2 cut(s)	367, 418
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	112, 244
MalI	GATC	6 cut(s)	77, 129, 240, 417, 423, 540
MboI	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
MboII	GAAGA	1 cut(s)	496
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	4 cut(s)	53, 108, 438, 628
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	2 cut(s)	538, 581
MseI	TTAA	2 cut(s)	138, 255
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
NlaIII	CATG	2 cut(s)	390, 422
NlaIV	GGNNCC	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	112
PagI	TCATGA	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	206, 277
PkrI	GCNGC	2 cut(s)	474, 508
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	2 cut(s)	6, 191
RsaNI	GTAC	2 cut(s)	5, 190
SaqAI	TTAA	2 cut(s)	138, 255
SatI	GCNGC	2 cut(s)	473, 507
Sau3AI	GATC	6 cut(s)	75, 127, 238, 415, 421, 538
ScrFI	CCNGG	1 cut(s)	477
SetI	ASST	9 cut(s)	51, 121, 144, 167, 225, 340, 376, 538, 570
SfaNI	GCATC	2 cut(s)	367, 418
SfcI	CTRYAG	1 cut(s)	193
Sse9I	AATT	4 cut(s)	53, 108, 438, 628
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	4 cut(s)	136, 307, 595, 615
TasI	AATT	4 cut(s)	53, 108, 438, 628
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	206, 277
Tru1I	TTAA	2 cut(s)	138, 255
Tru9I	TTAA	2 cut(s)	138, 255
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	472, 506
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	580
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.