Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004665.1

Orthogroup ID

OG0010614

Physical Location & Seq

Genomic Coordinates Reverse (-)

25206 .. 28705

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004665.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgatgatacgtgcaatctgtgctgctggaaaagctgatgtggcaatagaattttacaaggaaatactggacaccgacagaaacttgaggttagatagagcccaattcaagtttttggaggaggagctgagtgaaaatggcggttccattgttgaagaaggcgatcgtgaagaagagggtcaagcagttcaagaggccccaaagcgactgcatgatctgcgtcaggttttgcagttttctaaggttgaattgctcccaaaaggcttggagatccggtttctttcacagaagaggggctcaaatgcctgtgggtcgaatgttcagtcttttcgagctttcgtggcaacctggaatgtagcacggaaatctccccgtagtggccttaatctggacgatattcatcaggttaattatccatcaaacgtatctgtcttggggtatggtggttttggggttgtttactattccaagctgacaagcgaggataatactaaaattgtgaccgcttctggtgatcaaactgttaagttatgggatatcaggaaaagaaatattctgtatgcaagcaggtctgccattaccctgatcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

197

Amino Acids

22.13

Weight (kDa)

7.73

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821
rosa_laevigata	RLG00000009993
rosa_multiflora	Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234660 Rroxscaffold_5G00342370
rosa_rugosa	Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100
rosa_samantha	Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	558
AciI	CCGC	2 cut(s)	141, 504
AclWI	GGATC	2 cut(s)	265, 580
AcsI	RAATTY	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	377, 388
AgsI	TTSAA	4 cut(s)	109, 155, 191, 248
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	4 cut(s)	35, 127, 335, 472
AluI	AGCT	4 cut(s)	35, 127, 335, 472
AlwI	GGATC	2 cut(s)	265, 580
AoxI	GGCC	2 cut(s)	195, 379
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	524
BanII	GRGCYC	2 cut(s)	103, 299
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	424
BciT130I	CCWGG	1 cut(s)	349
BclI	TGATCA	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	558
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	145, 198
BmrFI	CCNGG	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 388
Bse1I	ACTGG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	377, 388
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	134, 137
BseXI	GCAGC	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	197, 381
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	377, 388
BsnI	GGCC	2 cut(s)	197, 381
Bsp1286I	GDGCHC	2 cut(s)	103, 299
Bsp143I	GATC	5 cut(s)	163, 214, 270, 514, 585
BspACI	CCGC	2 cut(s)	141, 504
BspANI	GGCC	2 cut(s)	197, 381
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	145, 198
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	265, 580
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	163, 214, 270, 514, 585
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	168, 284
BstAPI	GCANNNNNTGC	2 cut(s)	20, 217
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	2 cut(s)	128, 240
BstKTI	GATC	5 cut(s)	166, 217, 273, 517, 588
BstMBI	GATC	5 cut(s)	163, 214, 270, 514, 585
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 32, 41, 217, 341
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	197, 381
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	209
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	9 cut(s)	35, 101, 127, 197, 264, 297, 335, 381, 472
CviKI_1	RGCY	9 cut(s)	35, 101, 127, 197, 264, 297, 335, 381, 472
DdeI	CTNAG	2 cut(s)	128, 240
DpnI	GATC	5 cut(s)	165, 216, 272, 516, 587
DpnII	GATC	5 cut(s)	163, 214, 270, 514, 585
Eam1104I	CTCTTC	2 cut(s)	168, 284
EarI	CTCTTC	2 cut(s)	168, 284
Eco24I	GRGCYC	2 cut(s)	103, 299
Eco32I	GATATC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	538
EcoT38I	GRGCYC	2 cut(s)	103, 299
FaeI	CATG	1 cut(s)	215
FaiI	YATR	4 cut(s)	213, 441, 532, 561
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	1 cut(s)	24
FriOI	GRGCYC	2 cut(s)	103, 299
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	197, 381
HapII	CCGG	1 cut(s)	274
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	215
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188III	TCNNGA	4 cut(s)	167, 191, 389, 541
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	2 cut(s)	10, 423
HpyCH4V	TGCA	4 cut(s)	14, 211, 232, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 32, 41, 217, 341
HpyF3I	CTNAG	2 cut(s)	128, 240
HpySE526I	ACGT	2 cut(s)	10, 423
Hsp92II	CATG	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	5 cut(s)	163, 214, 270, 514, 585
LmnI	GCTCC	2 cut(s)	124, 258
Lsp1109I	GCAGC	1 cut(s)	10
MaeII	ACGT	2 cut(s)	10, 423
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	5 cut(s)	165, 216, 272, 516, 587
MboI	GATC	5 cut(s)	163, 214, 270, 514, 585
MboII	GAAGA	4 cut(s)	167, 182, 185, 301
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	103, 299
MluCI	AATT	5 cut(s)	50, 104, 248, 409, 495
MnlI	CCTC	7 cut(s)	81, 112, 115, 169, 187, 285, 475
MseI	TTAA	3 cut(s)	384, 408, 525
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	5 cut(s)	20, 32, 41, 217, 341
NdeII	GATC	5 cut(s)	163, 214, 270, 514, 585
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	145, 198
NmuCI	GTSAC	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	25
Ple19I	CGATCG	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	145, 198
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	384, 408, 525
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	163, 214, 270, 514, 585
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	2 cut(s)	103, 299
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	5 cut(s)	50, 104, 248, 409, 495
SsiI	CCGC	2 cut(s)	141, 504
SspI	AATATT	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	2 cut(s)	13, 426
TaqI	TCGA	2 cut(s)	314, 331
TasI	AATT	5 cut(s)	50, 104, 248, 409, 495
Tru1I	TTAA	3 cut(s)	384, 408, 525
Tru9I	TTAA	3 cut(s)	384, 408, 525
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	376
XapI	RAATTY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.